These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 928 fasta sequence [GATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGCAAATGTACTACTATTCAACATTCATGCTCTTCCAGAAGCAACAATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGAATTCAATATTATTTATCGATTGGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGAAGATAATTGGTGAAGCGGAAATTCTCCAGCTGTTTACGATTAAAGCATCTAAAAGTGTTGTGAAGACTGGACTTTTACCAGTTGCTGGATGTAGATGTATTAAAGGAAATATTATCGCTAATGTTAATAAAATAGGCCCTATTCTCACAGATCTAGGTGTTGATGGTGAACCGACTGAATTGTGTTACCGCATTGTCCGTCCGACTCACCACTCAACATCACCAAATAATAAACATGGAGAAAATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTAACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGTAGATTGTGGTATTGTATTAGTTTCTCCTGAAGTTCCGGATATTCATAGCAACAATCAAAATGTATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAACAATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAACACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACTTTCTGTATCAAATAATCAATTTACTACCAAAAAAAAAAAAAAAAAA] [+] EMBL CD194216 [GATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGCAAATGTACTACTATTCAACATTCATGCTCTTCCAGAAGCAACAATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGAATTCAATATTATTTATCGATTGGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGA ] [+] EMBL CD079232 [ CCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGCAAATGTACTACTATTCAACATTCATGCTCTTCCAGAAGCAACAATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGAATTCAATATTATTTATCGATTGGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGAAGATAATTGGTGAAGCGGAAATTCTCCAGCTGTTTACGATTAAAGCATCTAAAAGTGTTGTGAAGACTGGACTTTTACCAGTTGCTGGATGTAGATGTATTAAAGGAAATATTATCGCTAATGTTAATAAAATAGGCCCTATTCTCACAGATCTAGGTGTTGATGGTGAACCGACTGAATTGTGTTACCGCATTGTCCGTCCGACTCACCACTCAACATCACCAAATAATAAACATGGAGAAAATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTAACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGTAGATTGTGGTATTGT ] [-] EMBL CD077175 [ AACATGGAGAAAATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTAACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGTAGATTGTGGTATTGTATTAGTTTCTCCTGAAGTTCCGGATATTCATAGCAACAATCAAAATGTATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAACAATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAACACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACTTTCTGTATCAAATAATCAAT ] [-] EMBL AI395391 [ gtacCTCATTGCGTCATGAAAAATCTACTGTTGACAGTATTCGAAAAGGAGTAGATTGTGGTATTGTATTAGTTTCTCCTGAAGTTCCGGATAATCATAGCAACAATCAAAATGTATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAACAATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAACACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACAATCTGTATAAGAGAATAAACTTACTACCAAAAAAAAAAAAAAAAAA] consensusID : consensus_7195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [AATCCGCTTAACTTTCACCCCGAACACCAGTATACATTACAGTATATAATTTTTTTAAAACTTTATTTAGATAGAACGTGATTCAGCTGAATCTAATTTATTGAAAGAAAATTCTAATCAAATTTCCTTACCACTTGTAATCAAAAGTGATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGGTTAGTTTTATTTTGTTAGGTTTTGATTTTTTTATCATGGACAACATTTTGTTGACTTGTGTTTTTTAAAGGTTGATTTCAAATGACCAGTTGATCATGTATTCAGAATTTATATTTGTGAAAAATATGAATGACCCTAATCATAACATACCACTTTCATTATATAATTGGTGTCATTATCTATCAGTTGTGTGTATTTATATAGTACTTATGCTGAAGCTTCTATATCCG] [-] EMBL CD067638 [AATCCGCTTAACTTTCACCCCGAACACCAGTATACATTACAGTATATAATTTTTTTAAAACTTTATTTAGATAGAACGTGATTCAGCTGAATCTAATTTATTGAAAGAAAATTCTAATCAAATTTCCTTACCACTTGTAATCAAAAGTGATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCTGCCGCTGCAGTTAATGGTTAGTTTTATTTTGTTAGGTTTTGATTTTTTTATCATGGACAACATTTTGTTGACTTGTGTTTTTTAAAGGTTGATTTCAAATGACCAGTTGATCATGTATTCAGAATTTATATTTGTGAAAAATATGAATGACCCTAATCATAACATACCACTTTCATTATATAATTGGTGTCATTATCTATCAGTTGTGTGTATTTATATAGTACTTATGCTGAAGCTTCTATATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7195#0 GATGTACAAGGTAGTTTAGAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAA 60 consensus_7195#1 ------------------------------------------------------------ consensus_7195#0 TGTAAAATAGAATACTGCATTACTGGTGTTGGTCCGTTGACTGAATCTGAAGTAGACGCT 120 consensus_7195#1 ------------------------------------------------------------ consensus_7195#0 GCCGCTGCAGTTAATGCAAATGTACT-ACTATTCAACATTCATGCTCTTCCAGAAGCAAC 179 consensus_7195#1 ------------------AATCCGCTTAACTTTCACCCCGAACACCAGTATACATTACAG 42 *** ** * **** * * * * * * * consensus_7195#0 AATTGCAGCTGAACAAAATTGTGTTAAAATTAAAGA--ATTCAATATTATTTA-TCGATT 236 consensus_7195#1 TATATAATTTTTTTAAAACTTTATTTAGATAGAACGTGATTCAGCTGAATCTAATTTATT 102 ** * * **** * * ** * ** ** ***** ** ** * *** consensus_7195#0 GGCTGAAGAAGTTAGGGAATTAGTGAACGAGAAGCTTCCATCAGTATTGGTCGAGAAGAT 296 consensus_7195#1 GAAAGAAAATTCTAATCAAAT--TTCCTTACCACTTGTAATCAAAAGTGATGTACAAGGT 160 * *** * ** ** * * * * * **** * ** * * *** * consensus_7195#0 AATTGGTGAAGCGGAAATTCTCCAGCTGTTTACGATTAAAGCATCTAAAAGTGTTGT-GA 355 consensus_7195#1 AGTTTA-GAAGCGATAAAAACACTCCTTTCTACCTATCCATCAGATCAATGTAAAATAGA 219 * ** ****** ** * ** * *** * * ** * ** ** * ** consensus_7195#0 AGACTGGACTTTTACCAGTTGCTGGATGTAGATGTATTAAAGGAAATATTATCGCTAATG 415 consensus_7195#1 ATACTGCATTACTGGTGTTGGTCCGTTGACTGAAT-CTGAAGTAGACGCTGCCGCTGCAG 278 * **** * * * * * * ** * * *** * * * **** * consensus_7195#0 TTAATAAAATAGGCCCTATTCTCACAGATCTAGGTGTTGATGGTGAACCGACTGAATTGT 475 consensus_7195#1 TTAATG--GTTAGTTTTATTTTGTTAGGTTTTGATTTTTTTATC--ATGGACAACATTTT 334 ***** * * **** * ** * * * * ** * * *** *** * consensus_7195#0 GTTACCGCATTGTCCGTCCGACTCACCACTCAACATCACCAAATAATAAACATGGAGAAA 535 consensus_7195#1 GTTGACTTGTGTTTTTTAAAGGTTG--ATTTCAAATGACCAGTTGATCA-TGTATTCAGA 391 *** * * * * * * * * ** **** * ** * * * * consensus_7195#0 ATCCAACTACCGCTGAAAAGGACTTTTCTGATTCTAAAAATACCATAGTGGATCGAGCTA 595 consensus_7195#1 ATTTA--TATTTGTGAAAA--ATATGAATGACCCTAATCATAACATACCACTTTCATTAT 447 ** * ** ****** * * *** **** *** **** * * consensus_7195#0 ACTGTTACTCACTGCGTCATGAAAAATCTACTGTTGACAGTATTCGGAAAGGAGT-AGAT 654 consensus_7195#1 ATAATTG------GTGTCATTATCTATCAGTTGTGT---GTATTTATATAGTACTTATGC 498 * ** * ***** * *** *** ***** * ** * * * consensus_7195#0 TGTGGTAT-TGTATTAGTTTCTCCTGAAGTTCCGGATATTCATAGCAACAATCAAAATGT 713 consensus_7195#1 TGAAGCTTCTATATCCG------------------------------------------- 515 ** * * * *** * consensus_7195#0 ATCTGCGAAGAATTTCATTTCGCAATGGAAGGTAGGAGATATAATTCAATGTTATGTAAC 773 consensus_7195#1 ------------------------------------------------------------ consensus_7195#0 AATAAGTGAAAAAAGTTCAGTTGATTGGGATTTCGAGACCTGTATTTCAGAAACACCAAA 833 consensus_7195#1 ------------------------------------------------------------ consensus_7195#0 CACTCGAAATCCCATAACTTGATCATTTTTATTTTTAAAACAATAAACTTTCTGTATCAA 893 consensus_7195#1 ------------------------------------------------------------ consensus_7195#0 ATAATCAATTTACTACCAAAAAAAAAAAAAAAAAA 928 consensus_7195#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||