cluster # 7208

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Schistosoma mansoni
cluster # 7208 cluster # 7208 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7208#0 length = 810 sequences # 4

consensus_7208#1 length = 528 sequences # 1

consensusID : consensus_7208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 810
fasta sequence

                              [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCGTTTCATAGCGAAATGTACTGAACGAACACTTGATGAATATTTAGAAGCCGCTGCAATAAATCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGATGACAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCATCATCAGCCTATAATGTTCAATATTCTCCGCC]

[+] EMBL CD157352             [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD157427             [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD157452             [TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGAGGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATATTCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATATCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD153433             [                                                                                                                                                                                                                                                                          GCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCGTTTCATAGCGAAATGTACTGAACGAACACTTGATGAATATTTAGAAGCCGCTGCAATAAATCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGATGACAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCATCATCAGCCTATAATGTTCAATATTCTCCGCC]




>consensus_7208#0
TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGA
GGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATAT
TCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATA
TCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGA
AACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGA
TTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACT
AGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGG
AAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGT
ACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCA
TCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCG
TTTCATAGCGAAATGTACTGAACGAACACTTGATGAATATTTAGAAGCCGCTGCAATAAA
TCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGATGA
CAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCATC
ATCAGCCTATAATGTTCAATATTCTCCGCC

consensusID : consensus_7208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 528
fasta sequence

                              [GAGGACTCAAATGCTATCGAGGGTATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTTATGATGGAAATGGACGTACTGCTCGACTTCTTATGAATTTGATTTTAATGCGTTCTGGCTTACCTCCAGCTATTATTAAATAGAAGATCGTTTACTTATTATGAATTGCTG]

[+] EMBL CD083536             [GAGGACTCAAATGCTATCGAGGGTATACGCTTACATTAGCTCAAACTCGATCAATTTTGGAAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACTAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGGAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGTACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTTATGATGGAAATGGACGTACTGCTCGACTTCTTATGAATTTGATTTTAATGCGTTCTGGCTTACCTCCAGCTATTATTAAATAGAAGATCGTTTACTTATTATGAATTGCTG]




>consensus_7208#1
GAGGACTCAAATGCTATCGAGGGTATACGCTTACATTAGCTCAAACTCGATCAATTTTGG
AAACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGG
ATTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACAC
TAGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTG
GAAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTG
TACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGC
ATCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTTATG
ATGGAAATGGACGTACTGCTCGACTTCTTATGAATTTGATTTTAATGCGTTCTGGCTTAC
CTCCAGCTATTATTAAATAGAAGATCGTTTACTTATTATGAATTGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7208#0      TGTCGATCCCAGCATTCCTAAAGCATGTTTACACCGAGAACGTTTAATGCCAATTGTGGA 60
consensus_7208#1      ------------------------------------------------------------
                                                                                  

consensus_7208#0      GGAAATAGATCAACGAATTCTCAATGCAATCGATTTTAAAGTTCGTCAGTTCTATCATAT 120
consensus_7208#1      ------------------------------------------------------------
                                                                                  

consensus_7208#0      TCCAGAAGGTGATCCAGGTTTGCGTCGTGCTAAAGTTGAACATTATTTCAAGCATGTATA 180
consensus_7208#1      ----------------------------------------------------------GA 2
                                                                                 *

consensus_7208#0      TCACTCAAATGCTATCGAGGGTAATACGCTTACATTAGCTCAAACTCGATCAATTTTGGA 240
consensus_7208#1      GGACTCAAATGCTATCGAGGGTA-TACGCTTACATTAGCTCAAACTCGATCAATTTTGGA 61
                        ********************* ************************************

consensus_7208#0      AACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGA 300
consensus_7208#1      AACACGATTAGCTGTTGGTGGGAAAAGCCTATTGGAGCAAAATGAAGTCCTTGGTATGGA 121
                      ************************************************************

consensus_7208#0      TTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACT 360
consensus_7208#1      TTCAGCTCTCAGATATATTAACAACACTCTTCTACGTGGGGATTTGACTGCTATAACACT 181
                      ************************************************************

consensus_7208#0      AGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGG 420
consensus_7208#1      AGACAATATATTGGAATTGCATCGTAGACTCTTATCGTTTGTGGATTTGAGGGAGGCTGG 241
                      ************************************************************

consensus_7208#0      AAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGT 480
consensus_7208#1      AAGATTACGACGTTCTCAGGTGTTTATTGCTGATCACCAACCACCACCTCCATCTAGTGT 301
                      ************************************************************

consensus_7208#0      ACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCA 540
consensus_7208#1      ACCTGATCTAATGTCAGAATTAATTGGTTGGTTAAGTTCTGATGAAATAGCCGATATGCA 361
                      ************************************************************

consensus_7208#0      TCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATTTATTCG 600
consensus_7208#1      TCCAATTGAATTGGCTGCTCTGACACATTGGAAACTAGTGTTTATTCATCCATT---TTA 418
                      ******************************************************   *  

consensus_7208#0      TTTCATAGCGAAATGTACTGAACGAACACTTGATGAATAT--TTAGAAGCCGCTGCAATA 658
consensus_7208#1      TGATGGAAATGGACGTACTGCTCGACTTCTT-ATGAATTTGATTTTAATGCGTTCTGGCT 477
                      *     *     * ******  ***   *** ****** *  **  **  ** *      

consensus_7208#0      AATCATCAGACAAAATCCGACCATGTTACTCGTATTCCAATTGAAAGTGTATTGAATGAT 718
consensus_7208#1      TACCTCCAGCTATTATTAAATA--GAAGATCGTTTACTTATTATGAAT-TGCTG------ 528
                       * *  ***  *  **   *    *    **** * *  ***   * * *  **      

consensus_7208#0      GACAAAGAATCAAGTTCAGTAACATTTGCTGTTCATGAGTCAAAATCCTCAAGTTCATCA 778
consensus_7208#1      ------------------------------------------------------------
                                                                                  

consensus_7208#0      TCATCAGCCTATAATGTTCAATATTCTCCGCC 810
consensus_7208#1      --------------------------------