These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1150 fasta sequence [GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTTGTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCTCCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGCGATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGAACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGAT-TCTTAAGGAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGTCGTGCACCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTATCTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAACATTTTGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGATGAGAGCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTATATGCAACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTAATATTTTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAGATTTATTTAATAAAA] [+] EMBL CD078786 [GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTTGTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCTCCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGCGATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGAACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGAT TCTTAAGGAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTA ] [+] EMBL CD182166 [ TCGATTTTTTAAAATATGAACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGATGTCTTAAGGAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGC ] [-] EMBL CD113506 [ GAAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATCAAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGTATCCAGGTTTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGTCGTGCACCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTATCTTTTGGACAA ] [-] EMBL CD073246 [ TCGGACTTTACTGAATCAGCATTTCATGCTATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAGCCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTATGGTCGTGCACCGGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCATCTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAATCTTATCTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAACATTTTGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGATGAGAGCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTATATGCAACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTAATATTTTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAGATTTATTTAATAAAA] consensusID : consensus_7214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [GCATTATCAAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTATTACAGATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAAAAACATTTCGATACAATTATACAACAGCTGTTCATTCTGCAAATCTACATCCTACTGTACTAAATTTTAAGGACAACTATTCAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGTTGAATCAGAACGTAA] [+] EMBL CD110987 [GCATTATCAAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGTACGGATGACGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAAAGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCTGGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTATTACAGATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAAAAACATTTCGATACAATTATACAACAGCTGTTCATTCTGCAAATCTACATCCTACTGTACTAAATTTTAAGGACAACTATTCAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGTTGAATCAGAACGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7214#0 GGACCCGAAAACGGCGTCCAAGGAGAACTTAGTTAATTAAAATGGGCATCAAAAACATTT 60 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 GTAAATTAGCTGGAAAGTTGGGGAAAATGATTGAGCACTATAGCAAATTTACCCCGGTCT 120 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 CCCTGAGTTTAAAGGACCTTTTATTATTTGGTAATATGAAATAAACTTATCTTACACTGC 180 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 GATTTCATCTCAAGGTGAAACTGCGCCAGCATCCAAGTCATTCGATTTTTTAAAATATGA 240 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 ACTCCCAGTTCGACTGGGGAATATTATGCAGGAGATCCACCTTTTACCAGATTCTTAAGG 300 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 AAATCAAGATCTATCCAACAGATATGTTTATTGTATGAGGAGACATTCAATAGCATTATC 360 consensus_7214#1 ----------------------------------------------------GCATTATC 8 ******** consensus_7214#0 AAGTATGGAGAATGCTCAACAAAGTCGCCTTCCACCGT----ATCCAGGTTTACGGATGA 416 consensus_7214#1 AAGTATGGAGAATGCTCAACAAAGTCGTCATCGACGCAGATAATCCAGGTGTACGGATGA 68 *************************** * ** ** ******** ********* consensus_7214#0 CGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAA 476 consensus_7214#1 CGTTGACCTTATCTTACAGAAGCATTCGAGAGTAGTTGAAGTAATGGCATCGGGTATCAA 128 ************************************************************ consensus_7214#0 AGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCT 536 consensus_7214#1 AGAAATCCAGAGTGATGGATCGTGGTCTGAGTCACAAGAGTTGCAGCTACAGTATTTTCT 188 ************************************************************ consensus_7214#0 GGATCGGTTNTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTTCATGCT 596 consensus_7214#1 GGATCGGTTTTACGTTAGTAGAATTGGTATTCGGACTTTACTGAATCAGCATTATTACAG 248 ********* ******************************************* consensus_7214#0 ATATGGACCTACACTCTGCAACGTACAGTCCCACGTTGGGGGTATCGACCCAGATTGTAG 656 consensus_7214#1 ATTTTGGTGGAGGAATGGCGTCTAATATTGTCGAAA-AAACATTTCGATACA-ATTATAC 306 ** * * * ** * * * * * * **** ** *** ** consensus_7214#0 CCCAGTTCAAATCGCAGTAAATGCATACAGTTACTCCAGACTACTGTGTATTCAGGCGTA 716 consensus_7214#1 AACAGCTGTTCATTCTGCAAATCTACATC-CTACTGTACTAAATTTTAAGGACAACTATT 365 *** * * * **** * * **** * * * * ** * consensus_7214#0 TGGTCGTGCA-CCAGGGTGTGACATTGAAATCTACGATTGTGTAAATAAAGAGCGTGCAT 775 consensus_7214#1 CAACAATTCAATCAGCCCATCAAGTGACAGTAAGTGATCGAATGACATATGAAGTTGAAT 425 * ** *** * * * * * *** * * * * ** ** ** consensus_7214#0 CTGGTAGTTTCAACAAGATTGATTTTTGTGTGGACGCAGCTGGTCATGCGTCGACCAAAT 835 consensus_7214#1 CAGAACGTAA-------------------------------------------------- 435 * * ** consensus_7214#0 CTTATCTTTTGGACAACCAAATGAACTGTGCAGATTTATCTGTGAAGGGGAAAGACATAA 895 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 CATTTTGTTATATACCTGGTCATTTGTTTTATATGTTGTATGAATTGTTGAAAAATTCGA 955 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 TGAGAGCTGTTACTGAAAATCATAATAATGATGGACATTTGCCAAGAATACACATTTTTA 1015 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 TATGCAACGGACCTGAAGATATCGTTATTAAAGTGAGAAGTTCAGCTTAATTTTAGTGTA 1075 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 ATATTTTTAACTCATAATGCCACCACGTCATAATTTTTTGTGGTTCTTATATCTAATTAG 1135 consensus_7214#1 ------------------------------------------------------------ consensus_7214#0 ATTTATTTAATAAAA 1150 consensus_7214#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||