cluster # 7231

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Schistosoma mansoni
cluster # 7231 cluster # 7231 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7231#0 length = 800 sequences # 3

consensus_7231#1 length = 282 sequences # 1
consensus_7231#2 length = 260 sequences # 1

consensusID : consensus_7231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 800
fasta sequence

                              [GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTTGTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCGATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTAAATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATCCTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAA-CTATGNATGATATGCTGNTAATAAC-TACATGATATATA]

[+] EMBL CD081850             [GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTTGTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCGATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTAAATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATCCTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAA CTATGNATGATATGCTGNTAATAAC TACATGATAT   ]
[-] EMBL CD166267             [   AGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTTGTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCGATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD075565             [                                                                                                                                                                                                                 ATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTAAATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATCCTGTGAATGAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAACCTATGATTGATATGCTGTTAATAACTTACATGATATATA]




>consensus_7231#0
GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTT
GTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCG
ATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTAT
TAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAG
TTCATCATCTACACGGTCTACACGTGCAGCATTGTCATCAACTGTAACGGTTTAGAGTTA
ACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTTCTA
AATGTGACACTCCAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTTTTTC
TAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGGTGGT
TTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATACTAC
TGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTATTGTA
TGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTACTCA
CGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTCTATC
CTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAACTATGNATGATATGCTGN
TAATAACTACATGATATATA

consensusID : consensus_7231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [GAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAAACCTATGATTGATATGCTGTTAATAACTTACATGATATATAAATTGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTTCAATACAAATCTGGTCAGCGCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAACGAACTCCTATCTCTTACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGTATGCGCGTATGCAGGTGAGTATGCTATTACTAGTGTGCATAT]

[+] EMBL CD114640             [GAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAAACCTATGATTGATATGCTGTTAATAACTTACATGATATATAAATTGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTTCAATACAAATCTGGTCAGCGCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAACGAACTCCTATCTCTTACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGTATGCGCGTATGCAGGTGAGTATGCTATTACTAGTGTGCATAT]




>consensus_7231#1
GAGTAATGTTCCTGTCTTCTGTACTGAAAAAAAAACCTATGATTGATATGCTGTTAATAA
CTTACATGATATATAAATTGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTT
CAATACAAATCTGGTCAGCGCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAA
CGAACTCCTATCTCTTACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGT
ATGCGCGTATGCAGGTGAGTATGCTATTACTAGTGTGCATAT

consensusID : consensus_7231#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence

                              [CTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAACATTGTCATCAACTGTAACGGTGTACAGTTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTACCTTGTTTAGAGCAGGCTGTGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGATGAGGAAAGTGCCACATGGGG]

[+] EMBL CD192095             [CTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAGTTCATCATCTACACGGTCTACACGTGCAACATTGTCATCAACTGTAACGGTGTACAGTTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTACCTTGTTTAGAGCAGGCTGTGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGATGAGGAAAGTGCCACATGGGG]




>consensus_7231#2
CTAATAGTATTAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATC
ATATACCTAGTTCATCATCTACACGGTCTACACGTGCAACATTGTCATCAACTGTAACGG
TGTACAGTTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTA
CCTTGTTTAGAGCAGGCTGTGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGAT
GAGGAAAGTGCCACATGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7231#0      GTCAGCGAATTGTAGTGAAACCTGTACCTCAAGAAGTTCTGTTAATCGATATACAGGTTT 60
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      GTCAGACGACAAGAACGATGAAGTCACTACTAGTGTATGCTTAGATGCTTCTGGAAGTCG 120
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      ATGCAAATCGAAATCAAGTGTTAGCTCATTGAATACATCAACAAATACAACTAATAGTAT 180
consensus_7231#2      --------------------------------------------------CTAATAGTAT 10
consensus_7231#1      ---------------------------------------GAGTAATGTTCCTGTCTTCTG 21
                                                                        **        

consensus_7231#0      TAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAG 240
consensus_7231#2      TAATGAAATGAATAATTACAATGGAGCTTATTATATAAAGCAGTCAGATCATATACCTAG 70
consensus_7231#1      TACTGAAAAAAAAACCTATGATTGA---TATGCTGTTAATAACTTACATGATATATAAAT 78
                      ** *****  ** *  **  ** **   ***  * * **  * * * ** *****   * 

consensus_7231#0      TTCATCATCTACACGGTCTACA---CGTGCAGCATTGTCATCAACTGTAACGGTTTAGAG 297
consensus_7231#2      TTCATCATCTACACGGTCTACA---CGTGCAACATTGTCATCAACTGTAACGGTGTACAG 127
consensus_7231#1      TGTGTTAAAAAACCCGTTTAGAATTTATGTTACACCCTCTTTCAATACAAATCTGGTCAG 138
                      *   * *   *  * ** ** *     **   **   ** *  * *  **   *    **

consensus_7231#0      TTAACGGTGCTGGGAGATATATTCGATACTTTTTTTGTCTACATTTTACTTTTTCTTGTT 357
consensus_7231#2      TTAACAGTGCTGGGAGATATATTCGATACTTCATGCGTCTACATTCAACTTTACCTTGTT 187
consensus_7231#1      C--GCTTCGATAGAGATAAAATTAAATACAGTTCAACTAAAGAACGAACTCCTATCTCTT 196
                          *   * * *     * ***  ****        *  * *    ***      * **

consensus_7231#0      CTAAATGTGACACTC-CAGTTTTTATATGCACTTCATTCTCTTGATAATTTCATAACTTT 416
consensus_7231#2      TAGAGC---AGGCTG-TGATGTTCATTATAACTAAGTTCAAATGTTATGGGTGGGA---T 240
consensus_7231#1      ACACGAGACGTGTTGATTGCATTTGTTGTAGATGGGTGTTATGTATGCGCGTATGCAGGT 256
                                   *       **  *      *   *        *             *

consensus_7231#0      TTTCTAATTGCTAAGCGAGTAAACTTCAATTTATTGTAACACTTTCTTGTTGTCTGTCGG 476
consensus_7231#2      GAGGAAAGTGCCACATGGGG---------------------------------------- 260
consensus_7231#1      GAGTATGCTATTACTAGTGTGCATAT---------------------------------- 282
                              *   *   * *                                         

consensus_7231#0      TGGTTTTTTTGTACGTCAGTAGATCTATGTAAGTCTGAATAATGTGTACTATATGAAATA 536
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CTACTGCTACTTTAAAAACAATGTCAGTTCAAAAGTGATATATCTCATCATTCATGTTAT 596
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      TGTATGTAGTTGCTATTCACTATTGTCATATTATCTTTTGTTTCCCTTAATCAATCTGTA 656
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CTCACGTTTGGAGTATATTGTCCTGCTTTACTTCACTCATTTCCATTACATTTGTATTTC 716
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      TATCCTGTGAATGAGTAATGGTCCTGTCTTCTGTACTGAAAAAAAACTATGNATGATATG 776
consensus_7231#2      ------------------------------------------------------------
consensus_7231#1      ------------------------------------------------------------
                                                                                  

consensus_7231#0      CTGNTAATAACTACATGATATATA 800
consensus_7231#2      ------------------------
consensus_7231#1      ------------------------