These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7251#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 655 fasta sequence [AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATTCCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT] [+] EMBL CD075597 [AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATTCCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT] [+] EMBL CD077245 [ TTTATTTCATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAAATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTGGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTT TCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATA ] [-] EMBL CD083535 [ GTGTAGAATGACAAAATATTTTTAAAATAATTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCTAACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATCGATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACCTTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCGAAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCG ATGCACACCA TAGGTACGTGATGGCTcctcgt ] consensusID : consensus_7251#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 600 fasta sequence [TTTATGCACAATGNAGGTAGAGCAAATTTTTAAATATCAGTGAACGTCACTGTTAGTGATAATCCCCCAGATAAGTGATTTCTACAGATTGATGTCGTTGAGTTANNTTCAGCTAGATGTGGGTTTTGTTATCGATGAGAATCGCAACTACGATGANCANTTGGTATTAATGTGACCCCCCNCCCACCTTGGTATTTATGGCACTANCGCTATTAATATTAGTGTCGATGATAAGACCATCAGCGANAATGTAACAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT] [-] EMBL CD081895 [TTTATGCACAATGNAGGTAGAGCAAATTTTTAAATATCAGTGAACGTCACTGTTAGTGATAATCCCCCAGATAAGTGATTTCTACAGATTGATGTCGTTGAGTTANNTTCAGCTAGATGTGGGTTTTGTTATCGATGAGAATCGCAACTACGATGANCANTTGGTATTAATGTGACCCCCCNCCCACCTTGGTATTTATGGCACTANCGCTATTAATATTAGTGTCGATGATAAGACCATCAGCGANAATGTAACAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGACACAGAAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCTAATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGATTTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT] [-] EMBL CD077430 [ AAGCTCCCGTATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATTCCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7251#0 AATATTTATTTTATTGCAAACAAAATGAATGTGTAGAATGACAAAATATTTTTAAAATAA 60 consensus_7251#1 --------------TTTATGCACAATGNAGGTAGAG-----CAAA----TTTTTAAATA- 36 * * ** **** * ** ** **** **** ***** consensus_7251#0 TTCAGTTGAAACCGTACAACTGTTAGTTGAATAAATCACCACAGATAAAGGTGATTTTCT 120 consensus_7251#1 -TCAGTGAACGTC-----ACTGTTAGT--GATAATCCCCCA--GATAA--GTGATTTC-- 82 ***** * * ********* **** * *** ***** ******* consensus_7251#0 AACAAGAATTGATGTCGTTTGAGGTTTATTTCCAGCTTAGATGGTGGGTTTTTGTTTATC 180 consensus_7251#1 --TACAGATTGATGTCGTT---GAGTTANNTTCAGCT-AGATG-TGGGTTTTG--TTATC 133 * ************ * *** * ***** ***** ******** ***** consensus_7251#0 GATGAAGAATCGCAAACTACGATGAAACAATTGGTTATTAATGTGACCCCCCACCCCACC 240 consensus_7251#1 GATGA-GAATCGCAA-CTACGATGAN-CANTTGGT-ATTAATGTGACCCCCCNCCC-ACC 188 ***** ********* ********* ** ***** **************** *** *** consensus_7251#0 TTGGTTATTAATGGCACTTACGCTAATTAATATTAGTGTCGATGATAAAGACCATCAGCG 300 consensus_7251#1 TTGGT-ATTTATGGCACTANCGCTA-TTAATATTAGTGTCGATGATAA-GACCATCAGCG 245 ***** *** ******** ***** ********************** *********** consensus_7251#0 AAAATGTAAACAGCCAGAAAAACCTCTCGATAAAGCTTTGAAAAGTTTCAAAAGACACAG 360 consensus_7251#1 ANAATGTAA-CAGCCAGAAAAACCTCTCGATANAGCTTTGAAAAGTTTCAAAAGACACAG 304 * ******* ********************** *************************** consensus_7251#0 AAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCT 420 consensus_7251#1 AAATAAATATAGTGTTTTTTCTCTCTCTCTCTCTCTGAAATGACTAGAAACAGTTTGTCT 364 ************************************************************ consensus_7251#0 AATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGAT 480 consensus_7251#1 AATATAGAGGAGAAAGCAAAGAAGGACAATGGATATAATAATGTAAATTGTTGATTAGAT 424 ************************************************************ consensus_7251#0 TTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGT 540 consensus_7251#1 TTCTTATTTACAAGACCAAAATTGTTCATATTCTTTCAATGCTTTACGAAAAGCTCCCGT 484 ************************************************************ consensus_7251#0 ATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTNTNTACTTCTTTGATATT 600 consensus_7251#1 ATGCACACCATTAGGTACGTGATGGCTGTGAACACCTAGACTTTTTACTTCTTTGATATT 544 ****************************************** * *************** consensus_7251#0 CCAGTGTAGATCATCGAANAATATCATTNTATTGTATGGAATTTTAGTCTTTCGT- 655 consensus_7251#1 CCAGTGTAGATCATCGAAAAATATCATTTTATTGTATGGAATTTTAGTCTTTCGTT 600 ****************** ********* ************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||