These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 410 fasta sequence [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG] [+] EMBL CD096550 [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG] [+] EMBL CD096623 [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG] [+] EMBL CD096640 [TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGTGCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG] [-] EMBL CD096511 [ CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATTGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAACACTGAAGACCTCCTGTTAAAGCCAGTGGTTG ] consensusID : consensus_7255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence [CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCA] [-] EMBL CD147086 [CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAATGATGCAAAACAAAACATCCAAGCGACATTCAAAGAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACTGAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCACTCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCGCATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7255#0 TCAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAATATCATAAAT 60 consensus_7255#1 -CAATGGAGCTGTACCAACAGTTCCTTCTGACTGAAGATATTCTCAAGAGTATCATAAAT 59 ************************************************ ********** consensus_7255#0 GATGCAAAACAAAACATCCAAGCGACATTCAAAGAAATTACTGCTGCTTTGGGAGGCATT 120 consensus_7255#1 GATGCAAAACAAAACATCCAAGCGACATTCAAAGAAA----------------------- 96 ************************************* consensus_7255#0 GAAACCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACT 180 consensus_7255#1 ----CCAGTGTGGATGACGGTGTTTTGAGTGAAGACCTTGAGAAACAGATTGAAAAAACT 152 ******************************************************** consensus_7255#0 GAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCAC 240 consensus_7255#1 GAAGACCTCCTGTTAAAGCCAGTGGTTGGTCAAAAGCGAAAAGTGAAAACGAGCATTCAC 212 ************************************************************ consensus_7255#0 TCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCG 300 consensus_7255#1 TCCGCAAGATGTGAACACAGTCCTCTAAACCGTTCGAAATTAAACCAGGTAGTGGACTCG 272 ************************************************************ consensus_7255#0 CATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCAGTTGCGTAGT 360 consensus_7255#1 CATAAATCGCCGGCTAAGTTGTTAAAGAACTCCAGAAAGTTAAGTAAGCA---------- 322 ************************************************** consensus_7255#0 GCGAAAGACAGTCCGAAACAAACGGAACCTCAAAATATCTTTCAGCCGAG 410 consensus_7255#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||