cluster # 7267

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Schistosoma mansoni
cluster # 7267 cluster # 7267 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7267#0 length = 747 sequences # 2

consensus_7267#1 length = 722 sequences # 2
consensus_7267#2 length = 312 sequences # 1

consensusID : consensus_7267#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 747
fasta sequence

                              [AGTTTATTGACAAGATGACAATATTTCTTTATTTTACACTGTACAGATAACAAAATGTTGCAAAATTCTACAGAGCTAGTTGGTTTTGTGAAGGGCAAAAGTGTAGTAATAACAAGAAGTCTGTGAATGTTAGGTCGGGAACCAAGAAAAGAACTCTGAAACGTCGCCGTCGTATCTAGACATTAAGACAAGAGCACAAACAAACCAATAATAATAAAGAAAAATCTTACATTATAATTCGGAAGCACACTGTAATATTTGGATCAACTGTAATTTTCAGTCGATTTCAAAAGAGACATAACAGTTCTAATACATTACATTTGTTATGATTTATATCATGCATACGAAATATGCACGCGAGTACAAATCTACAAAATAGAGGTATTTGAATTATTCCCC--ATGTTTTCTTATCACTAAAGATCGTCCAACACAGAACGAAAGTACTTTTTTATGCAAGAAGAGAAACTTTTAGTCGCAATATGGATATCCAAATTGAGCGGTAGATACGTATGTGTACAAAAAAGTGACAATCAGGTAGGGATTATTTAAAAGTCAAGGCGAAACAAATGCTGAAAACTAATACAGAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAATTTAAACTGTCGATTGATCGCTTCCATCGCAACGGCTGTCTCCAAATCTAGTCGATCACGTAGTTTATCCAAGGGTTTCGGCCTCGTGCCGATTCTGGGCCTCGAGGCC]

[+] EMBL AI976589             [AGTTTATTGACAAGATGACAATATTTCTTTATTTTACACTGTACAGATAACAAAATGTTGCAAAATTCTACAGAGCTAGTTGGTTTTGTGAAGGGCAAAAGTGTAGTAATAACAAGAAGTCTGTGAATGTTAGGTCGGGAACCAAGAAAAGAACTCTGAAACGTCGCCGTCGTATCTAGACATTAAGACAAGAGCACAAACAAACCAATAATAATAAAGAAAAATCTTACATTATAATTCGGAAGCACACTGTAATATTTGGATCAACTGTAATTTTCAGTCGATTTCAAAAGAGACATAACAGTTCTAATACATTACATTTGTTATGATTTATATCATGCATACGAAATATGCACGCGAGTACAAATCTACAAAATAGAGGTATTTGAATTATTCCCC  ATGTTT                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD083756             [                                                                                                                                                                                                                                   TACATTATAATTCGGAAGCACACTGTAATATTTGGATCAACTGTAATTTTCAGTCGATTTCAAAAGAGACATAACAGTTCTAATACATTACATTTGTTATGATTTATATCATGCATACGAAATATGCACGCGAGTACAAATCTACAAAATAGAGGTATTTGAATTATTCCCCATATGTTTTCTTATCACTAAAGATCGTCCAACACAGAACGAAAGTACTTTTTTATGCAAGAAGAGAAACTTTTAGTCGCAATATGGATATCCAAATTGAGCGGTAGATACGTATGTGTACAAAAAAGTGACAATCAGGTAGGGATTATTTAAAAGTCAAGGCGAAACAAATGCTGAAAACTAATACAGAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAATTTAAACTGTCGATTGATCGCTTCCATCGCAACGGCTGTCTCCAAATCTAGTCGATCACGTAGTTTATCCAAGGGTTTCGGCCTCGTGCCGATTCTGGGCCTCGAGGCC]




>consensus_7267#0
AGTTTATTGACAAGATGACAATATTTCTTTATTTTACACTGTACAGATAACAAAATGTTG
CAAAATTCTACAGAGCTAGTTGGTTTTGTGAAGGGCAAAAGTGTAGTAATAACAAGAAGT
CTGTGAATGTTAGGTCGGGAACCAAGAAAAGAACTCTGAAACGTCGCCGTCGTATCTAGA
CATTAAGACAAGAGCACAAACAAACCAATAATAATAAAGAAAAATCTTACATTATAATTC
GGAAGCACACTGTAATATTTGGATCAACTGTAATTTTCAGTCGATTTCAAAAGAGACATA
ACAGTTCTAATACATTACATTTGTTATGATTTATATCATGCATACGAAATATGCACGCGA
GTACAAATCTACAAAATAGAGGTATTTGAATTATTCCCCATGTTTTCTTATCACTAAAGA
TCGTCCAACACAGAACGAAAGTACTTTTTTATGCAAGAAGAGAAACTTTTAGTCGCAATA
TGGATATCCAAATTGAGCGGTAGATACGTATGTGTACAAAAAAGTGACAATCAGGTAGGG
ATTATTTAAAAGTCAAGGCGAAACAAATGCTGAAAACTAATACAGAAGATACAAGAATCT
GAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAATTTAAACTGTCGATTGATCGCT
TCCATCGCAACGGCTGTCTCCAAATCTAGTCGATCACGTAGTTTATCCAAGGGTTTCGGC
CTCGTGCCGATTCTGGGCCTCGAGGCC

consensusID : consensus_7267#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 722
fasta sequence

                              [GCTGCTCCTCGCAACGGCTGTCTCCAAATCTAGACGATCACGTAGTTTATCCAAGGGTTTCGGATCTAGATCTATAATGGCACAACTAAGTAACATTCTGGGAATACAACAGCAAGTACCCGAAATAACAGACGATGGTAGTGGACAGTCAGGTTTTGCACGTTGTACAGTAATCATGATTGAGCAATCCCGAGCAATTAAAGAGATCAAGTATTTTTCAACTATATCAAAACTTTCAGCGATTTCTTCTGTGTGCAAATATTTTGACACTTCACCTTTCTGTGCTAGTTTAAGCCACATCTCCCATGTCCATCCATGTGATGTTAAAAAAGTACGTACACGTCTATAATGCGGGAAGATAAAAGCAATATCTGTCGTGATCAACAATTGAACAGAAAGTATACGTTGTAAAATACAACCATCTGGTAGTGTACAATTTCTTTGTATGCTATAACAATTATCACATGAAGTTGAATGAAATTTTTGATCTGCATGTAATGCACAATGCATTGAAAAAGGTTGACGATCAGTTGAGTTGATTGGAATGAGCACCTTCGTATCATCATTTGTACAGTCAAACTTGTGCAACAATGCTTTCAGTAGAGTGCCACGTACCAATCGGTCTCTATCATTGGAGAATTGACATGCTTCGGAACAACGACAAACATTCCTATGATCAAAACCATTGGGAAGTGCACTTTGTTGTTCACTTGAAGAAATTG]

[+] EMBL CD149691             [GCTGCTCCTCGCAACGGCTGTCTCCAAATCTAGACGATCACGTAGTTTATCCAAGGGTTTCGGATCTAGATCTATAATGGCACAACTAAGTAACATTCTGGGAATACAACAGCAAGTACCCGAAATAACAGACGATGGTAGTGGACAGTCAGGTTTTGCACGTTGTACAGTAATCATGATTGAGCAATCCCGAGCAATTAAAGAGATCAAGTATTTTTCAACTATATCAAAACTTTCAGCGATTTCTTCTGTGTGCAAATATTTTGACACTTCACCTTTCTGTGCTAGTTTAAGCCACATCTCCCATGTCCATCCATGTGATGTTAAAAAAGTACGTACACGTCTATAATGCGGGAAGATAAAAGCAA                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD115420             [                                                                                                                                                                             TCATAATTGAGCAATCCCGAGCAATTAAAGAGATCAAGTATTTTTCAACTATATCAAAACTTTCAGCGATTTCTTCTGTGTGCAAATATTTTGACACTTCACCTTTCTGTGCTAGTTTAAGCCACATCTCCCATGTCCATCCATGTGATGTTAAAAAAGTACGTACACGTTTATAATGCGGGAAGATAAAAGCAATATCTGTCGTGATCAACAATTGAACAGAAAGTATACGTTGTAAAATACAACCATCTGGTAGTGTACAATTTCTTTGTATGCTATAACAATTATCACATGAAGTTGAATGAAATTTTTGATCTGCATGTAATGCACAATGCATTGAAAAAGGTTGACGATCAGTTGAGTTGATTGGAATGAGCACCTTCGTATCATCATTTGTACAGTCAAACTTGTGCAACAATGCTTTCAGTAGAGTGCCACGTACCAATCGGTCTCTATCATTGGAGAATTGACATGCTTCGGAACAACGACAAACATTCCTATGATCAAAACCATTGGGAAGTGCACTTTGTTGTTCACTTGAAGAAATTG]




>consensus_7267#1
GCTGCTCCTCGCAACGGCTGTCTCCAAATCTAGACGATCACGTAGTTTATCCAAGGGTTT
CGGATCTAGATCTATAATGGCACAACTAAGTAACATTCTGGGAATACAACAGCAAGTACC
CGAAATAACAGACGATGGTAGTGGACAGTCAGGTTTTGCACGTTGTACAGTAATCATGAT
TGAGCAATCCCGAGCAATTAAAGAGATCAAGTATTTTTCAACTATATCAAAACTTTCAGC
GATTTCTTCTGTGTGCAAATATTTTGACACTTCACCTTTCTGTGCTAGTTTAAGCCACAT
CTCCCATGTCCATCCATGTGATGTTAAAAAAGTACGTACACGTCTATAATGCGGGAAGAT
AAAAGCAATATCTGTCGTGATCAACAATTGAACAGAAAGTATACGTTGTAAAATACAACC
ATCTGGTAGTGTACAATTTCTTTGTATGCTATAACAATTATCACATGAAGTTGAATGAAA
TTTTTGATCTGCATGTAATGCACAATGCATTGAAAAAGGTTGACGATCAGTTGAGTTGAT
TGGAATGAGCACCTTCGTATCATCATTTGTACAGTCAAACTTGTGCAACAATGCTTTCAG
TAGAGTGCCACGTACCAATCGGTCTCTATCATTGGAGAATTGACATGCTTCGGAACAACG
ACAAACATTCCTATGATCAAAACCATTGGGAAGTGCACTTTGTTGTTCACTTGAAGAAAT
TG

consensusID : consensus_7267#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [GAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAGTTTAAACTGTCGATTGATCGCTTCCATCGCAACGGCTGTCTCCAAATCTAGTCGATCACGTAGTTTATCCAAGGGTTTCGGATCTAGATCTATAATGGCGCAACTAAGTAACATTCTGGGAATACAACAGCCTGTACCCGAAATAACAGACGATGGTAGTGGACAGCTTTGAAAAAGGGGAGATAACAATAAAATGAAATTGTAATAGACCTAAGTGTAAAATATTTCAAAGCAAAAAAAAATAATGGTGCTATCACA]

[+] EMBL CD149543             [GAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAGTTTAAACTGTCGATTGATCGCTTCCATCGCAACGGCTGTCTCCAAATCTAGTCGATCACGTAGTTTATCCAAGGGTTTCGGATCTAGATCTATAATGGCGCAACTAAGTAACATTCTGGGAATACAACAGCCTGTACCCGAAATAACAGACGATGGTAGTGGACAGCTTTGAAAAAGGGGAGATAACAATAAAATGAAATTGTAATAGACCTAAGTGTAAAATATTTCAAAGCAAAAAAAAATAATGGTGCTATCACA]




>consensus_7267#2
GAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAGTTTAAA
CTGTCGATTGATCGCTTCCATCGCAACGGCTGTCTCCAAATCTAGTCGATCACGTAGTTT
ATCCAAGGGTTTCGGATCTAGATCTATAATGGCGCAACTAAGTAACATTCTGGGAATACA
ACAGCCTGTACCCGAAATAACAGACGATGGTAGTGGACAGCTTTGAAAAAGGGGAGATAA
CAATAAAATGAAATTGTAATAGACCTAAGTGTAAAATATTTCAAAGCAAAAAAAAATAAT
GGTGCTATCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7267#1      ------------------------------------------------------------
consensus_7267#2      GAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAGTTTAAA 60
consensus_7267#0      ------------------------------------------------------------
                                                                                  

consensus_7267#1      ----------GCTGCTCC--TCGCAACGGCTGTCT--CCAAATCTAGAC-GATCACGTAG 45
consensus_7267#2      CTGTCGATTGATCGCTTCCATCGCAACGGCTGTCT--CCAAATCTAGTC-GATCACGTAG 117
consensus_7267#0      -----AGTTTATTGACAAGATGACAATATTTCTTTATTTTACACTGTACAGATAACAAAA 55
                                   *      *  ***    * * *     *  **   * *** **  * 

consensus_7267#1      TTTATCCAAGGGTTTCGGATCTAGAT----CTAT-AATGGCACAACTA-AGTAACAT--- 96
consensus_7267#2      TTTATCCAAGGGTTTCGGATCTAGAT----CTAT-AATGGCGCAACTA-AGTAACAT--- 168
consensus_7267#0      TGTTGCAAAATTCTACAGAGCTAGTTGGTTTTGTGAAGGGCAAAAGTGTAGTAATAACAA 115
                      * *  * **    * * ** **** *     * * ** ***  ** *  ***** *    

consensus_7267#1      ----TCTGGGAATACAACAGCAAGTACCCGAAATAACAGACGATGGTAGTGGACAGTCAG 152
consensus_7267#2      ----TCTGGGAATACAACAGCCTGTACCCGAAATAACAGACGATGGTAGTGGACAGC--- 221
consensus_7267#0      GAAGTCTGTGAATGTTAGGTCGGGAACC--AAGAAAAGAACTCTGAAACGTCGCCGTCGT 173
                          **** ****   *   *  * ***  **  **   **  **  *     * *    

consensus_7267#1      GTTTTGCACGTTGTACAGTAATCATGATTGAGCAATCCCGAGCAATTAAAGAGATCAAGT 212
consensus_7267#2      --TTTGAAAAAGGGGAGATAACAATAAA-ATGAAATTGTAATAGACCTAAGTG-TAAAAT 277
consensus_7267#0      ATCTAGACATTAAGACAAGAGCACAAACAAACCAATAATAATAAAGAAAAATCTTACATT 233
                         * *             *      *      ***    *   *   **    *  * *

consensus_7267#1      AT--TTTTCAACTATATCAAAACTTTCAGCGATTTCTTCTGTGTGCAAATATTTTGACAC 270
consensus_7267#2      AT--TTCAAAGCAAAA--AAAAATAATGGTGCTATCACA--------------------- 312
consensus_7267#0      ATAATTCGGAAGCACACTGTAATATTTGG-ATCAACTGTAATTTTCAGTCGATTTCAAAA 292
                      **  **   *   * *    **      *      *                        

consensus_7267#1      TTCACCTTTCTGTGCTAGTTTAAGCCACATCTCCCATGTCCATCCATGTGATGTTAAAAA 330
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      GAGACATAACAGTTCTAA--TACATTACATTTGTTATG---ATTTATATCATGCATACGA 347
                                                                                  

consensus_7267#1      AGTACGTACACGTCTATAATGCGGGAAGATAAAAGCAATATCTGTCGTGATCAACAATTG 390
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      AATATGCACGCGAGTACAAATCTACAAAATAGAGGTA-TTTGAATTATTCCCCATGTTTT 406
                                                                                  

consensus_7267#1      AACAGAAAGTATACGTTGTAAAATACAACCATCTGGTAGTGTACAATTTCTTTGTATGCT 450
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      CTTATCAC-TAAAGATCGTCCAACACAGAACGAAAGTACTTTTTTATGCAAGAAGAGAAA 465
                                                                                  

consensus_7267#1      ATAACAATTATCACATGAAGTT--GAATGAAATTTTTGATCTGCATGTAATGCACAATGC 508
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      CTTTTAGTCGCAATATGGATATCCAAATTGAGCGGTAGATACGTATG---TGTACAAAAA 522
                                                                                  

consensus_7267#1      ATTGAAAAA-GGTTGACGATCAGTTGA--GTTGATTGGAATGAGCACCTTCGTATCATCA 565
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      AGTGACAATCAGGTAGGGATTATTTAAAAGTCAAGGCGAAACAAATGCTGAAAACTAATA 582
                                                                                  

consensus_7267#1      TTTGTACAGTCAAACTTGTGCAACAATGCTTTCAGTAGAGTGCCACGTACCAATCGGTCT 625
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      CA-GAAGATACAAGAATCTGAGAATATATATTATGAAAGACTTTTCGGTAAAAGCAATTT 641
                                                                                  

consensus_7267#1      CTATCATTGGAGAATTGACATGCTTCGGAACAACGACAAACATTCCTATGATCAAAACCA 685
consensus_7267#2      ------------------------------------------------------------
consensus_7267#0      AAACTGTCGATTGATCG-CTTCCATCGCAACGGCTGTCTCCAAATCTA--GTCGATCACG 698
                                                                                  

consensus_7267#1      TTGGGAAGTGCACTTTGTTGTTCACTTGAAGAAATTG------------ 722
consensus_7267#2      -------------------------------------------------
consensus_7267#0      TAGTTTATCCAAGGGTTTCGGCCTCGTGCCGATTCTGGGCCTCGAGGCC 747