These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 785 fasta sequence [GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTTCAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCTTGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAAGGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTTACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTTCTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGTTGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTCCCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGTAGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCTTGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCATGTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCCAGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGTTGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGATGGGG] [-] EMBL CD111577 [GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTTCAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCTTGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAAGGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTTACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTTCTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGTTGTATATCTGTCACATATTCCCTTCTTTTGAAGC ] [+] EMBL CD141800 [ TCTTCTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGTTGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTCCCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGTAGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCTTGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCATGTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCCAGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGTTGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGATGGGG] consensusID : consensus_7274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 339 fasta sequence [ACAGGAGGATTACGTCTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCCAACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAAGTTGAGTTGTGAGCTCGGAACANAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACC] [+] EMBL CD146719 [ACAGGAGGATTACGTCTTCCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCCAACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTGAAAAGTTGAGTTGTGAGCTCGGAACANAGGCGTTCTTTTGTTTTGAACTCGGCAGACATT ] [+] EMBL CD146708 [ CCCGATAAGTCAGAAGTTGATTAAGCTCGTTGACTTGGCTCTCTAGTTCCATCACCTTAGCACGCAGAGTGGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATTGGTAGTTTGCAAACTTGTTAGGTCTGAATGCCAACGTTCAACTTCTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTATTTTCCAGCTGACCACGTGTATTTG AAAGTTGAGTTGTGAGCTCGGAACAAAGGCGTTCTTTTGTTTTGAACTCGGCAGACATTTTATCAACC] consensusID : consensus_7274#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TAGTGATTGGTCTAAACCCCCCTGCTCGGCCATATTGGTTAACAGATCCTCACTTGCTGGACGGCTGGCAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACGTTTACTTTTTTAAAATTAAAGTGCTAAAAGCAGGCGGACGCCGCTATATATATTGCATGGAATAGGGAAATAAAATCTCGATTTTATAACGTTGGTTTCCCACCTTGAGATAATGATTA] [+] EMBL CD091325 [TAGTGATTGGTCTAAACCCCCCTGCTCGGCCATATTGGTTAACAGATCCTCACTTGCTGGACGGCTGGCAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACGTTTACTTTTTTAAAATTAAAGTGCTAAAAGCAGGCGGACGCCGCTATATATATTGCATGGAATAGGGAAATAAAATCTCGATTTTATAACGTTGGTTTCCCACCTTGAGATAATGATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7274#1 ------------------------------------------------------------ consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 GCGCTTGTTCTTCCTTCCAAATCTTCTGGAATAAAAGGCGAAGTATGTTTGCAGTTAGTT 60 consensus_7274#1 ------------------------------------------------------------ consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 CAATGTCTGACTTCAGTGCTTCAGTTGGCATATCGTCAGGTTCTGCCGCTTTCTCTCCCT 120 consensus_7274#1 ------------------------------------------------------------ consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 TGATTTGCCTGAAGGCCATCTTGATTTCTTCGACCGTTGGTGGAGTGACATCCGTAGGAA 180 consensus_7274#1 ------------------------------------------------------------ consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 GGCCAGTGTATGCTGCTTCGATGTCCGGTGTATTCAATAGGGCTGGTCTATCCAGCAGTT 240 consensus_7274#1 ------------------------------------------------------------ consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 ACTCGAATTATTCTACCTATCGTTTCTTCTGTTCTTGAACCTCCGTGATTGTCTTTTCTT 300 consensus_7274#1 ------------------------------------------------------------ consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 CTTTGCACTTGACTGATCTCTCTGGTTTACAATATTTCCCTGTTAGTTTCTTCGTCGAGT 360 consensus_7274#1 ----------------------------ACAGGAGGATTACGTCTTC-CCGATAAGTCAG 31 consensus_7274#2 ---------------------------------------------------------TAG 3 consensus_7274#0 TGTATATCTGTCACATATTCCCTTCTTTTGAAGCTTTTTACGCCGTCGTTGCTGGTTCTC 420 consensus_7274#1 AAGTTGAT-TAAGCTCGTTGACTT-GGCTCTCTAGTTCCATC-ACCTTAGCACGCAGAGT 88 consensus_7274#2 TGATTGGTCTAAACCCCCCTGCTC-GGCCATATTGGTTAACAGATCCTCACTTGCTGGAC 62 consensus_7274#0 CCATGTATTTCTGTTTGTCAGCTTCAATGCTCCTCTTTACTTGCTTCTTTGCTTCTGCGT 480 * * * ** * * * * * consensus_7274#1 GGCAGGATCAGTCTTCGAAAGTCGTTCTAAATCGTTTTCCTGTGAAGAAAGGAATTTATT 148 consensus_7274#2 GGCTGG---------CAATGATCTTTATCGGTTGTCGTCAGTTGCCAAAACG--TTTACT 111 consensus_7274#0 AGTCTGCTTGCGCCTTGACTTTCTCTGCTCGTGTTTGACTGTTGTTAATTGCTATTTTCT 540 * * * ** * * * * ** * *** * consensus_7274#1 GGTAGTT------TGCAAACTTGTT----AGGTCTGAATGCCAACGTTC------AACTT 192 consensus_7274#2 -----TT------TTTAAAATTAA-----AGTGCTAAAAGCAGGCGGAC------GCCGC 149 consensus_7274#0 TGTTCTTCCTTTCTTCAATTTTGTCCAGGATTCCCATAGGGATGCATTCCTTATGATCAT 600 ** * ** ** * * * * * * * consensus_7274#1 CTGCGCCACCGCGCACAGCTCTGCATCGGACTGATTCCAGCTCTTTTATAGTA-TTTTCC 251 consensus_7274#2 TATATATATTGCATGGAATAGGGAAATAAA---ATCTCGATTTTATAACGTTGGTTTCCC 206 consensus_7274#0 GTTACTTAGGACGCAGAACCTCCTGATACGTTGAAATTAATGCTTCTTTGATCGCTTCCC 660 * * * * * * ** ** consensus_7274#1 AGCTGACC-ACGT-GTATTTGAAAAGTTGAGTTGT-GAGCTCGGAACANAGGCGTTCTTT 308 consensus_7274#2 ACCTTGAG-ATAA-TGATTA---------------------------------------- 224 consensus_7274#0 AGTTACCCTACATCGTATTTTCTTGTTCGTTCAGTAGATCCTGTAGAGCCTGGAACCTGT 720 * * * *** consensus_7274#1 TGTTTTGAACTCGGCAGACATTTTATCAACC----------------------------- 339 consensus_7274#2 ------------------------------------------------------------ consensus_7274#0 TGTTGAGCGTTTTTAGCGTTTTTTGGTTAGCGTTTTTTTAAGAGTTGATTTTCTACGGGA 780 consensus_7274#1 ----- consensus_7274#2 ----- consensus_7274#0 TGGGG 785 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||