These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7298#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 941 fasta sequence [CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTAGATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGATCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAGACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATCCCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCGGGAGATATAAGCCGATATGAAAAGGCTGAATAGCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTCAACACGGATCACGTTT-CACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATGTAAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC] [+] EMBL CD122063 [CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTAGATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGATCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAGACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATCCCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCGGGAGATATAAGCCGATATGAAAAGGCTGAATAGTAACTGGAAAGAACTGGAAAGGAAGGCTCAAGACAGAGTTGGATGGGGAATGCT ] [+] EMBL CD098503 [ GCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTCAACACGGATCACGTTT CACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATGTAAGTATATCACAATACTATTATTTANAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC] [+] EMBL CD098506 [ GCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTCAACACGGATCACGTTT CACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACATGTAGATGTAAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATTAATAACTGACATCGGATTGGTTGAAGNTAGACATTAACACCGTTGGATGCCGGCCGGCT ] [+] EMBL CD088592 [ tCAACTGGAAAGAACTGGAAAAGAAGGCTCAAGACAAATTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAACAGGCGTATGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGTTAAAAACTCTACCTC ACAC GATCACGTTTACACAAATCTCCGTCATAATCAATTTTCAACTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAATACTTATAATCAATCATATCAAATTCCATTATTCCTTCAATTTATTTTTATTCTTATGTTTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAATTAGATTTACAAGAAACTGAATATTNTGGCTTGACATATCGAACTAGCTTACGTGTAGATGTAAGTATATCACAATACTATTATTTNAAAAACGAAGTGATTATACGTAATTATGTAATTCAATCCTAATAATT ATAACTGACA ] consensusID : consensus_7298#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCTGATTTCTTCCTCCTCTGAATGGAATCTGGTTTGTTCTCTCCCACAATATGTTGTTGCTGATAGTGTCTAGCCAACGGATCCGAAGTATTTTACGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTTTCGTAGTTCTCCAGGTTTCCACCGCATATAGTGGCATTTAGGTTGAAAATTCTGATCTTGGTGTTGGTTGACAGTTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTG] [+] EMBL CD195398 [TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCTGATTTCTTCCTCCTCTGAATGGAATCTGGTTTGTTCTCTCCCACAATATGTTGTTGCTGATAGTGTCTAGCCAACGGATCCGAAGTATTTTACGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTTTCGTAGTTCTCCAGGTTTCCACCGCATATAGTGGCATTTAGGTTGAAAATTCTGATCTTGGTGTTGGTTGACAGTTGTTTTGAGTTCCAGATGTTCTTCAGTTGTAAATATGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7298#0 CCCCTGCTAAACCTGATCTTTATCGTCTTCATTGTTATTATTCGTGGGTGTATAGCATTA 60 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 GATAACATTCATTGTAATTCCCTACTTCCTTGTTTTACAGGATGCTTTGGTGATCCTGGA 120 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 TCCCATCCTGTTAGTGCATTTCATAAACCAGCTTCCAGCTGAAGAGGAAATTAGGAAAAG 180 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 ACGTTGGAAGTGGATAGGACATACATTAAGGAAATCACCAATGTGCATCACGACTCAATC 240 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 CCTAACTTGGAATCCGGAAGGGAAGCGGAAAAGAGGAAGGCCAAAGAACACACTACGCCG 300 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 GGAGATATAAGCCGATATGAAAAGGCTGAATAGCAACTGGAAAGAACTGGAAAAGAAGGC 360 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 TCAAGACAGAGTTGGATGGAGAATGCTGGTGAGCGGCCTATGGTCCTCGACGAGGGGTAA 420 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 CAGGCGTAAGTAAGTAATTGAGCACGGTCAATCGTTTTCTAACTTCTATGAATTCATGGT 480 consensus_7298#1 ------------------TTTCCTCAATGTATGTCCTATCCACTTCCAGCACTTCTTCCT 42 * * * * ** * ***** * * *** * * consensus_7298#0 TAAAAACTCTACCTCAACACGGATCACGTTTCACAAATCTCCGTCATAATCAATTTTCAA 540 consensus_7298#1 GATTTCTTCCTCCTCTGAATGGAATCTGGTTTGT---TCTCTCCCACAATATGTTGTTG- 98 * ** **** * *** * ** **** ** *** ** * consensus_7298#0 CTTGCATTATGTAATATACTACTGTAACATTGATATTAAGAAATAGCATATTTTAGTAAA 600 consensus_7298#1 CTGATAGTGTCTAGCCAACGGATCCGAAGT--ATTTTACGTAG--ACAACTGTTAATAAA 154 ** * * * ** ** * * * ** *** * * ** * *** **** consensus_7298#0 TACTTATAATCAATC-ATATCAAATTTCATTATTCCTTCAATTTATTTTTATTCTTATGT 659 consensus_7298#1 CACCTGTATCTTCTGGATGATGGCTTTCGTAGTTCTCCAGGTTTCCACCGCATATAGTGG 214 ** * ** * ** **** * *** *** * * ** consensus_7298#0 TTTTCTTTTTTTAGAAAAATGCTCATGGAATTCATTTATTTGAAAAAGTTTGCAAACAAT 719 consensus_7298#1 CATT-TAGGTTGAAAATTCTGATCTTGGTGTTGGTTGAC---AGTTGTTTTGAGTTCCAG 270 ** * ** * ** ** ** *** ** ** * * **** * * consensus_7298#0 TAGATTTACAAGAAACTGAATATTTTGGCTTGACATATCGAACTAGCTTACGTGTAGATG 779 consensus_7298#1 ATGTTCTTCAGTTG--TAAATATGCTG--------------------------------- 295 * * * ** * ***** ** consensus_7298#0 TAAGTATATCACAATACTATTATTTAAAAAACGAAGTGATTATACGTAATTATGTAATTC 839 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 AATCCTAATAATTAATAACTGACATTGGATTGGTTGAAGTTAGACATTAACACCGTTGGA 899 consensus_7298#1 ------------------------------------------------------------ consensus_7298#0 TGCCGGCCGGCTGAGTGGTCTAGAGGTTAAACGCTCGTGCGC 941 consensus_7298#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||