cluster # 7316

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Schistosoma mansoni
cluster # 7316 cluster # 7316 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7316#0 length = 746 sequences # 3

consensus_7316#1 length = 432 sequences # 1
consensus_7316#2 length = 312 sequences # 1

consensusID : consensus_7316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 746
fasta sequence

                              [GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAAATTCCATATCACATCGATCTANAGCATTAGAAAAAGTGAAATCTTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTCTCTGTTTTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTTAGATTGAACTACTTTTTTATTTTAAAG-TATATAGAA]

[+] EMBL CD079459             [GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAAATTCCATATCACATCGATCTANAGCATTAGAAAAAGTGAAATCTTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTCTCTGTTTTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTTAGATTGAACTACTTTTTTATTTTAAAG TATATAGA ]
[-] EMBL CD073730             [                                                                                            CAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCCCTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACCCCAGGTTGTATTGTTTCCCCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATTTATCAAAAATTCCATATCCCATCGATTTAAAGCATTAGAAAAAGTGAAATCTTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTTTCTGTTTTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTTTATACATTTAGATTGAAGGACTTTTTTA TTTAAAGAAATATAGAA]
[+] EMBL CD158280             [                                                                                                                                                                                                                                                    GTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAAATT                                                                                                                                                                                           ]




>consensus_7316#0
GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAAT
GTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAAT
TATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCA
AGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGG
ACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACC
GTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGA
CTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAA
ACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACG
TGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAAT
GGATAAATCTATCAAAAATTCCATATCACATCGATCTANAGCATTAGAAAAAGTGAAATC
TTTTTTGTTGAATCATGAATTTCAATGAAAGCAGTAATTCTTTCTCTGTTTTGAACAAAA
ACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTTAGATTGAACT
ACTTTTTTATTTTAAAGTATATAGAA

consensusID : consensus_7316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 432
fasta sequence

                              [AATGGACTTCGCGCTGAACAACAAGACTTGATATCTTAAATCTGATTGACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAGAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCAC]

[+] EMBL CD183271             [AATGGACTTCGCGCTGAACAACAAGACTTGATATCTTAAATCTGATTGACTAATGTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAGAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCAC]




>consensus_7316#1
AATGGACTTCGCGCTGAACAACAAGACTTGATATCTTAAATCTGATTGACTAATGTCGCG
TCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAATTATTGG
TGAGGAATTTGCCGGAAAAGTAAGAACAGTTGATTTAGATTTACCTGAAGTTCAAGGTAG
TATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGGACCTGT
ATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACCGTTTAT
TAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAA
TGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGT
ACAATTATTCAC

consensusID : consensus_7316#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 312
fasta sequence

                              [TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAATTCCATATCACATCGATCTAAAGCACTAGAGAAAGTGAAAATCTCTTTTTGGTGAATCATGAATTTCTAATGAGAAGCAGTGAAATCTCTCTCTGTGTTGAACAAAAACGTGTATAGAAGGAGTATCGCTATATTGGAGTAATTATATATACACTTAGATTGTACTACTACTTTATTTGAAGTATATAGAGTATTA]

[+] EMBL AW497745             [TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAATTCCATATCACATCGATCTAAAGCACTAGAGAAAGTGAAAATCTCTTTTTGGTGAATCATGAATTTCTAATGAGAAGCAGTGAAATCTCTCTCTGTGTTGAACAAAAACGTGTATAGAAGGAGTATCGCTATATTGGAGTAATTATATATACACTTAGATTGTACTACTACTTTATTTGAAGTATATAGAGTATTA]




>consensus_7316#2
TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACGTGATTTTGGATGGGATTGTAT
ATTTCAACCGGATAACTTTAGACAAACTTATGCTGAAATGGATAAATCTATCAAAATTCC
ATATCACATCGATCTAAAGCACTAGAGAAAGTGAAAATCTCTTTTTGGTGAATCATGAAT
TTCTAATGAGAAGCAGTGAAATCTCTCTCTGTGTTGAACAAAAACGTGTATAGAAGGAGT
ATCGCTATATTGGAGTAATTATATATACACTTAGATTGTACTACTACTTTATTTGAAGTA
TATAGAGTATTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7316#0      GTTGTGGTCATGTCAACCGTAAATTTTGTTCTGTATATACGTACACTTATAACTACTAAT 60
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ------------------------------------------------------------
                                                                                  

consensus_7316#0      GTCGCGTCAGTTAACTTTTGTAACTGGTAATCCAAACAAATTAACTGAATTCCTTAAAAT 120
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ------------------------------------------------------------
                                                                                  

consensus_7316#0      TATTGGTGAGGAATTTGCCGGAAAAGTAAAAACAGTTGATTTAGATTTACCTGAAGTTCA 180
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ------------------------------------------------------------
                                                                                  

consensus_7316#0      AGGTAGTATCGAAGATGTTAGTATACAAAAATGTTTATCTGCTTTTAAAATAATCAATGG 240
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ------------------------------------------------------------
                                                                                  

consensus_7316#0      ACCTGTATTAATCGAAGATACAGCACTTTGTTTTAAAGCACTGAATGGAATGCCTGGACC 300
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ------------------------------------------------------------
                                                                                  

consensus_7316#0      GTTTATTAAATGGTTTTTAAAAGCGGTCGGTCCTGATGGACTACCTCGTATGTTGACTGA 360
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ------------------------------------------------------------
                                                                                  

consensus_7316#0      CTTCAATGATTATCGTGCAGATGCTGTATGCACTTTTGCCTATTGTGATAGCCTTGAAAA 420
consensus_7316#2      ------------------------------------------------------------
consensus_7316#1      ----------------------------AATGGACTTCGCGCTGAACAACAAGACTTGAT 32
                                                                                  

consensus_7316#0      ACCAGTACAATTATTCACTGGTATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACG 480
consensus_7316#2      ---------------------TATCACACCAGGTTGTATTGTTTCACCTCGTGGACCACG 39
consensus_7316#1      ATCTTAAATCTGATTGACTAATGTCGCGTCAGTTA--ACTTTTGTAACTGGTAATCCAAA 90
                                           * ** *  *** *   * * **  * ** **   ***  

consensus_7316#0      TGATTTTGGATGGGATTGT--ATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAA 538
consensus_7316#2      TGATTTTGGATGGGATTGT--ATATTTCAACCGGATAACTTTAGACAAACTTATGCTGAA 97
consensus_7316#1      CAAATT-AACTGAATTCCTTAAAATTATTGGTGAGGAATTTGCCGGAAAAGTAAGAACAG 149
                        * **    **   *  *  * ***      *   ** **     ***  ** *   * 

consensus_7316#0      ATGGAT-AAATCTATCAAAAATTCCATATCACATCGAT--CTANAGCATTAGAAAAAGTG 595
consensus_7316#2      ATGGAT-AAATCTATCAAAA-TTCCATATCACATCGAT--CTAAAGCACTAGAGAAAGTG 153
consensus_7316#1      TTGATTTAGATTTACCTGAAGTTCAAGGTAGTATCGAAGATGTTAGTATACAAAAATGTT 209
                       **  * * ** ** *  ** *** *  *   *****       ** *    * ** ** 

consensus_7316#0      AAA--TCTTTTTTGTTGAATCATGAATTTC-AATGA-AAGCAGT-AATTCTTTCTCTGTT 650
consensus_7316#2      AAAATCTCTTTTTGGTGAATCATGAATTTCTAATGAGAAGCAGTGAAATCTCTCTCTGTG 213
consensus_7316#1      TATCTGCTTTTAAAATAATCAATGGACCTGTATT---AATCGAAGATACAGCACTTTGTT 266
                       *      ***    * *   *** *  *  * *   ** *    *       ** *** 

consensus_7316#0      TTGAACAAAAACGTTTATAGAAGGAATATCGATATTTTGGATTAATTATTNTATACATTT 710
consensus_7316#2      TTGAACAAAAACGTGTATAGAAGGAGTATCGCTATATTGGAGTAATTAT-ATATACACTT 272
consensus_7316#1      TT----AAAGCACTGAATGGAATGCCTGGACCGTTTATTAAATGGTTTTTAAAAGCGGTC 322
                      **    ***    *  ** *** *  *       *  *  * *  ** *   *  *  * 

consensus_7316#0      AGAT-TGAACTACTTTTT--TATTTTAAAGTATATAGAA--------------------- 746
consensus_7316#2      AGAT-TGTACTACTACTT--TATTT-GAAGTATATAGAGTATTA---------------- 312
consensus_7316#1      GGTCCTGATGGACTACCTCGTATGTTGACTGACTTCAATGATTATCGTGCAGATGCTGTA 382
                       *   **    ***   *  *** *  *   *  *  *                      

consensus_7316#0      --------------------------------------------------
consensus_7316#2      --------------------------------------------------
consensus_7316#1      TGCACTTTTGCCTATTGTGATAGCCTTGAAAAACCAGTACAATTATTCAC 432