These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 521 fasta sequence [TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAACAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTGTAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGTACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTAAAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA] [+] EMBL CD157619 [TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAACAATTATATGAAGATAGATAAATACATGTACGTGCCTCT ] [+] EMBL CD157637 [ TTACATAGAACAAAATTGTCACAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTGTAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAAT ] [+] EMBL CD157672 [ TACGTGCCTCTGTGTATATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGC AACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAA ] [+] EMBL CD133975 [ ATAGAGAGGAATAGATGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTTCCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAGTTGTAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGTACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTAAAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA] consensusID : consensus_7320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence [CNCTAAATGTAAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTAGGCATGAATCTAATCTGCTGATGTTATTATTGACTATTGGAATTGGAGATTGTCAGCCACTCGGCAGCGTATGAC] [-] EMBL CD157642 [CNCTAAATGTAAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATTAGTCATAGTAAAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTACACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTAGGCATGAATCTAATCTGCTGATGTTATTATTGACTATTGGAATTGGAGATTGTCAGCCACTCGGCAGCGTATGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7320#0 TGTGTGTATATATGTGTAAAAGTGGCACAGCAAAATATTTTACATAGAACAAAATTGTAA 60 consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 CAATTATATGAAGATAGATAAATACATGTACGTGCCTCTGTGTATATAGAGAGGAATAGA 120 consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 TGATGAAAGGGGAAAATGGGGCCGAGGTAATGCAGATAGAAAGCAAACGTACAAAATCTT 180 consensus_7320#1 ------------------------------------------------------------ consensus_7320#0 CCATGAGACAGATAGGTAGACTAACCAGTAATCATAATAATAATAATAAACACTAAATTG 240 consensus_7320#1 --------------------------------------------------CNCTAAATGT 10 * ****** consensus_7320#0 TAAGTAGTATTATTGGTAATAAAACAAATTTGATAACTAATGATATTATTAGTCATAGTA 300 consensus_7320#1 AAAGTAGTATTATTGGTAATAAACCAAATTTGATAACTAATGATATTATTAGTCATAGTA 70 ********************** ************************************ consensus_7320#0 AAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTAC 360 consensus_7320#1 AAGGTTCATTTCTCCCTGAGATGGCGATAATAATAATAAGAATAATAATAACAAGATTAC 130 ************************************************************ consensus_7320#0 ACCTTAGTGATATTGAAAAAATAAGGGAACCTATTTATTGAAATATGGATTGACACGTGT 420 consensus_7320#1 ACCTTAGTGATATTAGTAGTATTAGTAGTAGTATTTA----GGCATGAATCTA-ATCTGC 185 ************** * ** ** ****** *** ** * * ** consensus_7320#0 ACAAAATCACATACACATGCGCACACGCTTAGATTGAATGACATGAACTAATCAAAATTA 480 consensus_7320#1 TGATGTTATTATTGAC---------TATTGGAATTGGAGATTGTCAGCCACTCGG----- 231 * * ** ** * **** * * * * * ** consensus_7320#0 AAATAGCATGCAACACAGAATGAAATATTCAACAAAGATGA 521 consensus_7320#1 ---CAGCGTATGAC--------------------------- 242 *** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||