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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7322#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 673 fasta sequence
[GAGACGATAATGTTAATAAATCCATCGTTAGGTGTGAATTCACTCTGGTGAAAGGACTGTATGTAAGCACCAACAAATGACGAATGGCCAAAGTTAGCCATGTTTTTTAAGACTGATGCAACTTCATTGGGACTAGGATTCACGAAGGCTCCATAAGAGCCACCAGCAGTTATTAGTGGTGTGCCATAAATGTGATAAACTAGGCTCCCTGATGGCTTACTTGTGGTAATCCTGTGGGAACACGCAAAACCGCCTGGTCCGAAAGGTATAGAAGCTGCAGAGAACTGGAGAGCAGACGTCCAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATATCTGTATTGATGGCTGTATTTA-TGAAGTCACTATGCGAACCACGACCACAACCGCCTGGCAACGGAAATTCTGATCCATATGCAACAGCTTTAACCCACACAGTTAGCGGAACACTATAGGAAGAATAAACGTAGAATGTTGACAATGTTTTGTTTTCAGTAAAACCAGCTAAGCCGCAATGAGCCGAGTATTGTGAAGTGTCATATGTAAAAGAGGCTGATGTGGACACTAGAAGTGGATTGAAGGGACTGTGTACTTGATAAACAATAAATTTGCTCCCTGGTGGGATTTTGAGAACTCGGACGTACAGCA]
[+] EMBL CD201906 [GAGACGATAATGTTAATAAATCCATCGTTAGGTGTGAATTCACTCTGGTGAAAGGACTGTATGTAAGCACCAACAAATGACGAATGGCCAAAGTTAGCCATGTTTTTTAAGACTGATGCAACTTCATTGGGACTAGGATTCACGAAGGCTCCATAAGAGCCACCAGCAGTTATTAGTGGTGTGCCATAAATGTGATAAACTAGGCTCCCTGATGGCTTACTTGTGGTAATCCTGTGGGAACACGCAAAACCGCCTGGTCCGAAAGGTATATAAGCTGCAGAGAA ]
[+] EMBL CD092720 [ AATAAATCCATCGTTAGGTGTGAATTCACTCTGGTGAAAGGACTGTATGTGAGCACCAACAAATGACGAATGGCCAAAGTTAGCCATGTTTTTTAAGACTGATGCAACTTCATTGGGACTAGGATTCACGAAGGCTCCATAAGAGCCACCAGCAGTTATTAGTGGTGTGCCATAAATGTGATAAACTAGGCTCCCTGATGGCTTACTTGTGGTAATCCTGTGGGAACACGCAAAACCGCCTGGTCCGAAAGGTGTAGAAGCTGCAGAGAACTGGAGAGCAGACGTCCAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATATCTGTATTGATGGCTG ]
[-] EMBL CD186418 [ ATAAATGTGATAAACTAGGCTCCCTGATGGCTTACTTGTGGTAATCCTGTGGGAACACGCAAAACCGCCTGGTCCGAAAGGTATAGAAGCTGCAGAGAACTGGAGAGCAGACGTCCAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATATCTGTATTGATGGCTGTATTTACTGAAGTCACTATGCGAACCACGACCACAACCGCCTGGCAACGGAAATTCTGATCCATATGCAAC ]
[+] EMBL CD183220 [ TATAGAAGCTGCAGAGAACTGGAGAGCAGACGTCCAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATATCTGTATTGATGGCTGTATTTA TGAAGTCACTACGCGAACCACGACCACAACCGCCTGGCAACGGAAATTCTGATCCATATGCAACAGCTTTAACCCACACAGTTAGCGGAACACTATAGGAAGAATAAACGTAGAATGTTGACAATGTTTTGTTTTCAGTAAAACCAGCTAAGCCGCAATGAGCCGAGTATTGTGAAGTGTCATATGTAAAAGAGGCTGATGTGGACACTAGAAGTGGATTGAAGGGACTGTGTACTTGATAAACAATAAATTTGCTCCCTGGTGGGATTTTGAGAACTCGGACGTACAGCA]
consensusID : consensus_7322#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[CAGGACAACCGTAAAGAATGACAGGAGTATATGGCACTTGCCAGGTATCACCAGAAACTGAGTACTCCACAACAACAGTGATAATATATGCTGTAGCCGGACGTCGTGAGACGATAATGTTAATAAATCCATCGTTAGGTGTGAATTCATTGTGGTAATCCTGTGGGAACACGCAAAACCGCCTGGTCCGAAAGGTATAGAAGCTGCAGAGAACTGGAGAGCAGACGTCCAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATATCTGTATTGATGGCTGTATTTATGAAGTCACTACGCGA]
[+] EMBL CD122913 [CAGGACAACCGTAAAGAATGACAGGAGTATATGGCACTTGCCAGGTATCACCAGAAACTGAGTACTCCACAACAACAGTGATAATATATGCTGTAGCCGGACGTCGTGAGACGATAATGTTAATAAATCCATCGTTAGGTGTGAATTCATTGTGGTAATCCTGTGGGAACACGCAAAACCGCCTGGTCCGAAAGGTATAGAAGCTGCAGAGAACTGGAGAGCAGACGTCCAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATATCTGTATTGATGGCTGTATTTATGAAGTCACTACGCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7322#0 GAGACGATAATGTTAATAAATCCATCGTTAGGTGTGAATTCACTCTGGTGAAAGGACTGT 60
consensus_7322#1 ---------------------------------------------------CAGGACAAC 9
*****
consensus_7322#0 ATGTAAGCACCAACAAATGACGAATGGCCAAAGTTAGCCATGTTTTTTAAGACTGATGCA 120
consensus_7322#1 -CGTAAAGAATGACAGG-AGTATATGGCACTTGCCAG--GTATCACCAGAAACTGAGT-- 63
**** * *** ***** * ** * * * *****
consensus_7322#0 ACTTCATTGGGACTAGGATTCACGAAGGCTCCATAAGAGCCACCAGCAGTTATTAGTGGT 180
consensus_7322#1 ACTCCACAACAAC-AGTGATAATATATGCTGTAGCCGGAC-GTCGTGAGACGATAATGTT 121
*** ** ** ** * * * *** * * * * ** ** ** *
consensus_7322#0 GTGCCATAAATGTGATAAACTAGGCTCCCTGATGGCTTACTTGTGGTAATCCTGTGGGAA 240
consensus_7322#1 A----ATAAATCCATC--GTTAGGT------GTGAATTCATTGTGGTAATCCTGTGGGAA 169
****** **** ** ** ********************
consensus_7322#0 CACGCAAAACCGCCTGGTCCGAAAGGTATAGAAGCTGCAGAGAACTGGAGAGCAGACGTC 300
consensus_7322#1 CACGCAAAACCGCCTGGTCCGAAAGGTATAGAAGCTGCAGAGAACTGGAGAGCAGACGTC 229
************************************************************
consensus_7322#0 CAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATA 360
consensus_7322#1 CAATAGCTTAAAAACTCAATGCGTTTCGGGCTTGAAAGATTTATATTTTTAGTCATTATA 289
************************************************************
consensus_7322#0 TCTGTATTGATGGCTGTATTTATGAAGTCACTATGCGAACCACGACCACAACCGCCTGGC 420
consensus_7322#1 TCTGTATTGATGGCTGTATTTATGAAGTCACTACGCGA---------------------- 327
********************************* ****
consensus_7322#0 AACGGAAATTCTGATCCATATGCAACAGCTTTAACCCACACAGTTAGCGGAACACTATAG 480
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 GAAGAATAAACGTAGAATGTTGACAATGTTTTGTTTTCAGTAAAACCAGCTAAGCCGCAA 540
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 TGAGCCGAGTATTGTGAAGTGTCATATGTAAAAGAGGCTGATGTGGACACTAGAAGTGGA 600
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 TTGAAGGGACTGTGTACTTGATAAACAATAAATTTGCTCCCTGGTGGGATTTTGAGAACT 660
consensus_7322#1 ------------------------------------------------------------
consensus_7322#0 CGGACGTACAGCA 673
consensus_7322#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||