cluster # 7335

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Schistosoma mansoni
cluster # 7335 cluster # 7335 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7335#0 length = 715 sequences # 2
consensus_7335#1 length = 449 sequences # 1

consensus_7335#2 length = 414 sequences # 1
consensus_7335#3 length = 224 sequences # 1

consensusID : consensus_7335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 715
fasta sequence

                              [AGGTAGGTGGCCAGTAGATTCTGCAAACAGTAAGGTTACAGTAAAAGGATCGGACATACACACGTATATATTCTGGAATGATACGGTTGAAATATGAATTATAAAGTTTGACTGTAAAACTAGAACAGTGACGTAGAATAAAAGAAATTCCAATTCGAAACCATATATATATCATTTGAGCGCTATTTGTTGTTTTTTTTATTGTTGTCTACAGGCTTTTAACAAGTGAGCACCACTACTCACTTAATACAAAATGACTATTAAAAAGGTTTTAGACAGTGGAAAATACAGTTATCATTGATACTTTAACCATGTACCGGATGATTGCATTCGACGAATTTTAGATCTGACAGCTGTAGCTGTTCTTGTTTCTTTCAATCGTGAAGAGGCTATACGAGATCGAACTTCACTAAGAGAAGGCAGTGTACCGCATACACCATTAGGTTTAGGATTTCCGTGAAAGAACTCTTTAAAAAGTCGACTAATAAGTCTGGTCTCCCAATCTGCAAATAATCGACTACCTCCAATATCTTCTTGTCCACGTTTCCGGTTATTCTCATTGACATACTCAGGAATATTTCTAACGGAAAGGAAGACATTGCAGGCTTCCTGACTAGGCCTCTGGGATGAAG-AAATTGATGATTATTGCATGTTTGTTGATTCCGAC-ATGATTGGGGAAGCGTGTGATACCTAGGTTGGGGATCCGGCCTCGTGC]

[+] EMBL CD065254             [AGGTAGGTGGCCAGTAGATTCTGCAAACAGTAAGGTTACAGTAAAAGGATCGGACATACACACGTATATATTCTGGAATGATACGGTTGAAATATGAATTATAAAGTTTGACTGTAAAACTAGAACAGTGACGTAGAATAAAAGAAATTCCAATTCGAAACCATATATATATCATTTGAGCGCTATTTGTTGTTTTTTTTATTGTTGTCTACAGGCTTTTAACAAGTGAGCACCACTACTCACTTAATACAAAATGACTATTAAAAAGGTTTTAGACAGTGGAAAATACAGTTATCATTGATACTTTAACCATGTACCGGATGATTGCATTCGACGAATTTTAGATCTGACAGCTGTAGCTGTTCTTGTTTCTTTCAATCGTGAAGAGGCTATACGAGATCGAACTTCACTAAGAGAAGGCAGTGTACCGCATACACCATTAGGTTTAGGATTTCCGTGAAAGAACTCTTTAAAAAGTCGACTAATAAGTCTGGTCTCCCAATCTGCAAATAATCGACTACCTCCAATATCTTCTTGTCCACGTTTCCGGTTATTCTCATTGACATACTCAGGAATATTTCTAACGGAAAGGAAGACATTGCAGGCTTCCTGACTAGGCCTCTGGGATGAAG AAATTGATGATTATTGCATGTTTGTTGATTCCGAC ATGAT                                           ]
[-] EMBL CD077742             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTCCGTGAAAGAACTCTTTAAAAAGTCGACTAATAAGTCTGGTCTCCCAATCTGCAAATAATCGACTACCTCCAATATCTTCTTGTCCACGTTTCCGGTTATTCTCATTGACATACTCAGGAATATTTCTAACGGAAGGAAAGACATTGCAGGCTTCCTGACTAGGCCTCTGGGATGAAGAAAATTGATGATTATTGGATGTTTGTTGATTCGGACAATGATTGGGGAAGCGTGTGATACCTAGGTTGGGGATCCGGCCTCGTGC]




>consensus_7335#0
AGGTAGGTGGCCAGTAGATTCTGCAAACAGTAAGGTTACAGTAAAAGGATCGGACATACA
CACGTATATATTCTGGAATGATACGGTTGAAATATGAATTATAAAGTTTGACTGTAAAAC
TAGAACAGTGACGTAGAATAAAAGAAATTCCAATTCGAAACCATATATATATCATTTGAG
CGCTATTTGTTGTTTTTTTTATTGTTGTCTACAGGCTTTTAACAAGTGAGCACCACTACT
CACTTAATACAAAATGACTATTAAAAAGGTTTTAGACAGTGGAAAATACAGTTATCATTG
ATACTTTAACCATGTACCGGATGATTGCATTCGACGAATTTTAGATCTGACAGCTGTAGC
TGTTCTTGTTTCTTTCAATCGTGAAGAGGCTATACGAGATCGAACTTCACTAAGAGAAGG
CAGTGTACCGCATACACCATTAGGTTTAGGATTTCCGTGAAAGAACTCTTTAAAAAGTCG
ACTAATAAGTCTGGTCTCCCAATCTGCAAATAATCGACTACCTCCAATATCTTCTTGTCC
ACGTTTCCGGTTATTCTCATTGACATACTCAGGAATATTTCTAACGGAAAGGAAGACATT
GCAGGCTTCCTGACTAGGCCTCTGGGATGAAGAAATTGATGATTATTGCATGTTTGTTGA
TTCCGACATGATTGGGGAAGCGTGTGATACCTAGGTTGGGGATCCGGCCTCGTGC

consensusID : consensus_7335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 449
fasta sequence

                              [AGCTCACCTTAAAAGAATTCAGTAACCAATCAGGATAACTTTACAAACTGAAGTATATACATATAATTTTATCCTTAATAAGTAATAGTAATGATAGAAAAAAAACATACTTGATGTTTATTTTCAAACCAATGAGTACGTTCTTTAGCTCTTAGTTCTTGTCTAATCAACATTGCTCTATGTTCTTGTTCTAATTGTGATATTTTTTGATTTTGACTAAAATGAAATTATAAATTTTCGTTAAAACAAACTAAATAATGTAAACAAAGATGGATGGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTCAAGTCCTATTCGGGACTCGTCAGCTGCATGTATCTGCATCTCAGAGTTAACGTTCACTCTGGGACTCGAACCCAGTACCTTTCGCTCCAAACTCCTCCGCGTTATCCACTCGGCCACTGAGTCCTGATAGTCACTTGCT]

[+] EMBL CD128888             [AGCTCACCTTAAAAGAATTCAGTAACCAATCAGGATAACTTTACAAACTGAAGTATATACATATAATTTTATCCTTAATAAGTAATAGTAATGATAGAAAAAAAACATACTTGATGTTTATTTTCAAACCAATGAGTACGTTCTTTAGCTCTTAGTTCTTGTCTAATCAACATTGCTCTATGTTCTTGTTCTAATTGTGATATTTTTTGATTTTGACTAAAATGAAATTATAAATTTTCGTTAAAACAAACTAAATAATGTAAACAAAGATGGATGGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTCAAGTCCTATTCGGGACTCGTCAGCTGCATGTATCTGCATCTCAGAGTTAACGTTCACTCTGGGACTCGAACCCAGTACCTTTCGCTCCAAACTCCTCCGCGTTATCCACTCGGCCACTGAGTCCTGATAGTCACTTGCT]




>consensus_7335#1
AGCTCACCTTAAAAGAATTCAGTAACCAATCAGGATAACTTTACAAACTGAAGTATATAC
ATATAATTTTATCCTTAATAAGTAATAGTAATGATAGAAAAAAAACATACTTGATGTTTA
TTTTCAAACCAATGAGTACGTTCTTTAGCTCTTAGTTCTTGTCTAATCAACATTGCTCTA
TGTTCTTGTTCTAATTGTGATATTTTTTGATTTTGACTAAAATGAAATTATAAATTTTCG
TTAAAACAAACTAAATAATGTAAACAAAGATGGATGGTGGCTAGCAGTGGAATCCAGTTT
GACGCGCGTCAAGTCCTATTCGGGACTCGTCAGCTGCATGTATCTGCATCTCAGAGTTAA
CGTTCACTCTGGGACTCGAACCCAGTACCTTTCGCTCCAAACTCCTCCGCGTTATCCACT
CGGCCACTGAGTCCTGATAGTCACTTGCT

consensusID : consensus_7335#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [TTGTTAAAATATAATAGAAGAACCCATGGTGGAGAAGATTTGTAGCTCAGGTGGGTGATTTTGATGTAGGTTTGTTTACGTTCTAATTGACTAGCTAATCCATTGGCACGTTCAACATCAACCATTAAATCTTCTAATTCACCTTGTAAACGTGCTTTAGTTTTTTCTAATTGTCCACATTTTGATTTAGCTGATTCGGCTTCTGATTCTAATTCTTGTATNTTAGCATTCATTTTACGTTTTAATTCTTCAACTTCTTCAGAACGAACATCTCCACCACCGNCACCACGTGAACGTAATTGTTGTAATTTCACCTTGTAATTTTTGTAATTGACGTTGTAAATCACCTTTAGCTGATTGTTCTTCTTCTAAAGTTTCACGTAATGAATCTAAGTCACCAGTTAAATTACGTAC]

[+] EMBL CD196798             [TTGTTAAAATATAATAGAAGAACCCATGGTGGAGAAGATTTGTAGCTCAGGTGGGTGATTTTGATGTAGGTTTGTTTACGTTCTAATTGACTAGCTAATCCATTGGCACGTTCAACATCAACCATTAAATCTTCTAATTCACCTTGTAAACGTGCTTTAGTTTTTTCTAATTGTCCACATTTTGATTTAGCTGATTCGGCTTCTGATTCTAATTCTTGTATNTTAGCATTCATTTTACGTTTTAATTCTTCAACTTCTTCAGAACGAACATCTCCACCACCGNCACCACGTGAACGTAATTGTTGTAATTTCACCTTGTAATTTTTGTAATTGACGTTGTAAATCACCTTTAGCTGATTGTTCTTCTTCTAAAGTTTCACGTAATGAATCTAAGTCACCAGTTAAATTACGTAC]




>consensus_7335#2
TTGTTAAAATATAATAGAAGAACCCATGGTGGAGAAGATTTGTAGCTCAGGTGGGTGATT
TTGATGTAGGTTTGTTTACGTTCTAATTGACTAGCTAATCCATTGGCACGTTCAACATCA
ACCATTAAATCTTCTAATTCACCTTGTAAACGTGCTTTAGTTTTTTCTAATTGTCCACAT
TTTGATTTAGCTGATTCGGCTTCTGATTCTAATTCTTGTATNTTAGCATTCATTTTACGT
TTTAATTCTTCAACTTCTTCAGAACGAACATCTCCACCACCGNCACCACGTGAACGTAAT
TGTTGTAATTTCACCTTGTAATTTTTGTAATTGACGTTGTAAATCACCTTTAGCTGATTG
TTCTTCTTCTAAAGTTTCACGTAATGAATCTAAGTCACCAGTTAAATTACGTAC

consensusID : consensus_7335#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGATCGAACTTCGCGGGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGA]

[+] EMBL CD157848             [TGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGATCGAACTTCGCGGGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGA]




>consensus_7335#3
TGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATAC
GATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGA
TGAGTCAGACATTAATCATACGATCGAACTTCGCGGGGGAGGTGATGTGTGGGCGAGAAT
GATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7335#1      ------------------------AGCTCACCTTAAAAGAATTCAGTAACCAATCA-GGA 35
consensus_7335#2      ---------------------------TTGTTAAAATATAATAGAAGAACCCATGGTGGA 33
consensus_7335#0      AGGTAGGTGGCCAGTAGATTCTGCAAACAGTAAGGTTACAGTAAAAGGATCGGACATACA 60
consensus_7335#3      ------------------------------------------------------------
                                                                                  

consensus_7335#1      TAACTTTACAAACTGAAGTATATACATATAATTTTATCCTTAATAAGTAATAGTAAT--- 92
consensus_7335#2      GAAGATTTGTAGCTCAGGTGGGTGATTTTGATGTAGGTTTGTTTACGTTCTAATTGACTA 93
consensus_7335#0      CACGTATATATTCTGGAATG-ATACGGTTGAAATATGAATTATAAAGTT-TGACTGTAAA 118
consensus_7335#3      ----------------------TGATGTGTGGGCGAGAATGATAATGAT-TGGTTGTCTT 37
                                            *                *    * *   *         

consensus_7335#1      GATAGAAAAAAAAC-------ATACTTGATGTTTATTTTCAAACCAATGAGTACGTTCTT 145
consensus_7335#2      GCTAATCCATTGGC-------ACGTTCAACATCAACCATTAAATCTTCTAATTCACCTTG 146
consensus_7335#0      ACTAGAACAGTGACGTA--GAATAAAAGAAATTCCAATTCGAAACCATATATATATCATT 176
consensus_7335#3      GATGAGTCAGACATTAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGA-- 95
                        *     *            *      *  *         *         *        

consensus_7335#1      TAGCTCTTAGTTCTTGTCTAATCAACATTGCTCTATGTTCTTGTTCTAATTGTG-ATATT 204
consensus_7335#2      TAAACGT--GCTTTAGTTTTTTCTA-ATTG-TCCACATT-TTGATTTAGCTGAT-TCGGC 200
consensus_7335#0      TGAGCGCTATTTGTTGTTTTTTTTATTGTTGTCTACAGGCTTTTAACAAGTGAGCACCAC 236
consensus_7335#3      -GAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAATCATACGATCGAACTTCGC 154
                                   * *  *               *      *         *        

consensus_7335#1      TTTTGATTT---------TGACTAAAATGAAATTATAAATTTTCGTTAAAACAAACTAA- 254
consensus_7335#2      TTCTGATTC---------TAATTCTTGT-ATNTTAGCATTCATTTTACGTTTTAATTCT- 249
consensus_7335#0      TACTCACTTAATACAAAATGACTATTAAAAAGGTTTTAGACAGTGGAAAATACAGTTATC 296
consensus_7335#3      GGGGGAGGTGA-------TGTGTGG-GCGAGAATGATAATGATTGGTTGTCTTGATGAG- 205
                           *            *   *      *   *   *                      

consensus_7335#1      ----ATAATGTAAACAAAGAT-GGATGGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGT 309
consensus_7335#2      ----TCAACTTCTTCAGA-AC-GAACA-TCTCCACCACCGNCA-CCACGTGAACGTAATT 301
consensus_7335#0      ATTGATACTTTAACCATGTACCGGATGATTGCATTCGACGAATTTTAGATCTG-ACAGCT 355
consensus_7335#3      --TCAGACATTAATCATACGA--------------------------------------- 224
                            *   *   **                                            

consensus_7335#1      CAAGTCCTATTCGGGACTCGTCAGCTGCATG----TATCTGCATCTCAGAGTTAACGTTC 365
consensus_7335#2      ---GTTGTAATTTCACCTTGTAATTTT--TG----TAATTGACGTTGTAAATCACCTTTA 352
consensus_7335#0      GTAGCTGTTCTTGTTTCTTTCAATCGTGAAGAGGCTATACGAGATCGAACTTCACTAAGA 415
consensus_7335#3      ------------------------------------------------------------
                                                                                  

consensus_7335#1      ACTCTGGGACTCGAACCCAGTACCTTTCGCTCCAAACTCCTCC-GCGTTATCCACTCGGC 424
consensus_7335#2      GCTGATTGTTCTTCTTCTAAAGTTTCACGTAATGAA----TCT-AAGTCACCAGTTAAAT 407
consensus_7335#0      GAAGGCAGTGTACCGCATACACCATTAGGTTTAGGATTTCCGTGAAAGAACTCTTTAAAA 475
consensus_7335#3      ------------------------------------------------------------
                                                                                  

consensus_7335#1      CACTGAGTCCTGATAGTCACTTGCT----------------------------------- 449
consensus_7335#2      TACGTAC----------------------------------------------------- 414
consensus_7335#0      AGTCGACTAATAAGTCTGGTCTCCCAATCTGCAAATAATCGACTACCTCCAATATCTTCT 535
consensus_7335#3      ------------------------------------------------------------
                                                                                  

consensus_7335#1      ------------------------------------------------------------
consensus_7335#2      ------------------------------------------------------------
consensus_7335#0      TGTCCACGTTTCCGGTTATTCTCATTGACATACTCAGGAATATTTCTAACGGAAAGGAAG 595
consensus_7335#3      ------------------------------------------------------------
                                                                                  

consensus_7335#1      ------------------------------------------------------------
consensus_7335#2      ------------------------------------------------------------
consensus_7335#0      ACATTGCAGGCTTCCTGACTAGGCCTCTGGGATGAAGAAATTGATGATTATTGCATGTTT 655
consensus_7335#3      ------------------------------------------------------------
                                                                                  

consensus_7335#1      ------------------------------------------------------------
consensus_7335#2      ------------------------------------------------------------
consensus_7335#0      GTTGATTCCGACATGATTGGGGAAGCGTGTGATACCTAGGTTGGGGATCCGGCCTCGTGC 715
consensus_7335#3      ------------------------------------------------------------