These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 348 fasta sequence [GATGGTACGGTGATGGACGGAGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC] [+] EMBL BG931973 [GATGGTACGGTGATCGATGGAGGACTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC] [+] EMBL BG931994 [GATGGTACGGTGATGGACGCGGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCAAGCCCCCCATCCa ] [+] EMBL BG932007 [GATGGTACNGTGATGGACGGCGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGAACAAGTGCAGCTTGCCCTCACACAGCATAGGCCTA ] consensusID : consensus_7388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACAGGCCGCCATCGATCAC] [+] EMBL BG932015 [GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCACAGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCCATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGACTTCCATGGCCACAGGCCGCCATCGATCAC] consensusID : consensus_7388#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [TTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTGGCTCCACCTAGGCTCACGCCTGTTTTTTTCCGCTTGCCACAGCGACCCTCCTACGGGTGGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCCCCCTTACATCAACGGTCCGGTCTAGGCCCAACGCTGG] [+] EMBL CD091595 [TTCTCACTTGAATATTTGCTACTACCACCAAGATCTGCGCCTGTGGTGGCTCCACCTAGGCTCACGCCTGTTTTTTTCCGCTTGCCACAGCGACCCTCCTACGGGTGGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCACACAGCATAGGCCCCCCTTACATCAACGGTCCGGTCTAGGCCCAACGCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7388#0 GATGGTACGGTGATGGACGGAGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCAC 60 consensus_7388#1 ---GGTACGGTGAGAGATTGTGGGCTTCAAGGTTCTCACTTGAATATTTGCTACTACCAC 57 consensus_7388#2 --------------------------------TTCTCACTTGAATATTTGCTACTACCAC 28 **************************** consensus_7388#0 CAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCAC 120 consensus_7388#1 CAAGATCTGCGCCTGTGGTTGCTTCACCTAGGCTCACGCCTGAGGCTTCCCGCTAGCCAC 117 consensus_7388#2 CAAGATCTGCGCCTGTGGTGGCTCCACCTAGGCTCACGCCTGTTTTTTTCCGCTTGCCAC 88 ******************* *** ****************** ** ***** ***** consensus_7388#0 AGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC 180 consensus_7388#1 AGCGACCCTCCTACTCGTTGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC 177 consensus_7388#2 AGCGACCCTCCTACGGGTGGCCGTCACTCCATGCCTAGACCAAGTGCAGCTTGCCCTCAC 148 ************** ** ***************************************** consensus_7388#0 ACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATATGTCCAACGCTCGAGCGCCATCC 240 consensus_7388#1 ACAGCATAGGCCTAGCTTACAGCAACGGTCCGGTATAGGTCCAACGCTCGAGCGCCATCC 237 consensus_7388#2 ACAGCATAGGCCCCCCTTACATCAACGGTCCGGTCTAGGCCCAACGCTGG---------- 198 ************ ****** ************ ** * ******** * consensus_7388#0 ATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGAC 300 consensus_7388#1 ATTTTCAGGGCTGGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGCTTCCGAC 297 consensus_7388#2 ------------------------------------------------------------ consensus_7388#0 TTCCATGGCCACCGTCCTGCTGTCTAGTCCGCCATCCATCACCGTACC 348 consensus_7388#1 TTCCATGGCCAC-------------AGGCCGCCATCGATCAC------ 326 consensus_7388#2 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||