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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 976 fasta sequence
[GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAAGTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATACGGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTTTGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAGTTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTTACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATTTTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACGTTATATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACACACATACTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTTCCAGACACTATTGCTACGCAACTTGATTTNCATCCATTTNCGTAATAGTCGAATATGAGAAACCATATATTTCTCGCTATACCTAATCCGGNTCTCAACTGGATGGNGCATCTTTCCATTTTANATGGGTGGTCAGNCACCACAGCAAGNAGTTAGTTTTTATTGCCTGACATGTATTCGCATTCGTATGCAGTCATAAAAC]
[+] EMBL CD081869 [GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAAGTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATACGGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTTTGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAGTTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTTACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATTTTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACGTTATATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACACACATACTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTTCCAGACACTATTGCTACGCAACTTGATTTNCATCCATTTNCGTAATAGTCGAATATGAGAAACCATATATTTCTCGCTATACCTAATCCGGNTCTCAACTGGATGGNGCATCTTTCCATTTTANATGGGTGGTCAGNCACCACAGCAAGNAGTTAGTTTTTATTGCCTGACATGTATTCGCATTCGTATGCAGTCATAAAAC]
consensusID : consensus_7394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 615 fasta sequence
[TAAACGTACTATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTC-AAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACACACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTTTCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATATGAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGCATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAGTTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTTAAAATACTAAGTGTT]
[-] EMBL CD074170 [TAAACGTACTATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCTAAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACACACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTTTCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATATGAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGCATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAGTTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTTAAAATACTAAGTGTT]
[-] EMBL CD075581 [ TGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTC AAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTTTAAGGATTTATTTTGTTGCCCACACACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTTTCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATATGAGAAACCAATATTATTTTTTCGCTATTACTTATTTCTGTTTTTTCATACTGTAATGTGCATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCCCCAGCAAAGTAAGTTTAGTTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTTAAAATACTAAGT ]
[+] EMBL SMAA69206 [ ATTGAGAACAATCGGAATTTTTAAAAATTCCTATTTC AAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCA ]
consensusID : consensus_7394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATAAATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATCTNACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTCTCATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTATNTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC]
[+] EMBL SM377 [TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATAAATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATCTNACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTCTCATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTATNTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7394#0 GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAA 60
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 GTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATAC 120
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 GGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTT 180
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAG 240
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTT 300
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 ACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATT 360
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACG 420
consensus_7394#1 ------------------------------------------------------TAAACG 6
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TTATATTTTATCCTAAAGTAAATTGCTTTTTGAAT-CTAATGGTAGTCTACTCTGATATA 479
consensus_7394#1 TACTATTTTATCCTAAAGTAAATTGCTTTTTGAAT-CTAATGGTAGTCTACTCTGATATA 65
consensus_7394#2 -TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATA 59
*************************** * * * ******* ******* *****
consensus_7394#0 AATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATC 539
consensus_7394#1 AATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATC 125
consensus_7394#2 AATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATC 119
****** * ********** ********** ******* *********************
consensus_7394#0 TTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTC 599
consensus_7394#1 TTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTC 185
consensus_7394#2 TNACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTC 179
* ******* ********************************* * ***** * ** ***
consensus_7394#0 TCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTC-ATACAACTATTGTC-ATTA 657
consensus_7394#1 TCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTC-ATACAACTATTGTC-ATTA 243
consensus_7394#2 TCATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTA 239
**** ** *************** ******* **** * * * ********** * ****
consensus_7394#0 TTT-CACCAATT--GTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACA 714
consensus_7394#1 TTT-CACCAATT--GTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACA 300
consensus_7394#2 TNTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC---------------------- 277
* * **** * * * ** **** * ***
consensus_7394#0 CACATACTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTT 774
consensus_7394#1 CACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTT 360
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 -CCAGACACTATTGCTACGCAACTTGATTTNCA-TCCATTTNCGTAA-TAGTCGA-ATAT 830
consensus_7394#1 TCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATAT 420
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 GAGAAACCA-TAT-ATTTCT-CGCTAT-ACCTAATCCGGNTC--TCA-ACTGGATGGNGC 883
consensus_7394#1 GAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGC 480
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 ATCTTT---CCATTTTAN--ATGGGTGGT-------CAGNCACCACAGCAAGNAGTTAGT 931
consensus_7394#1 ATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAG 540
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TTTTATTGCCTGACA-TGTATTCGCA---TTCGTA-TGCAGTCATAAAAC---------- 976
consensus_7394#1 TTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTT 600
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 ---------------
consensus_7394#1 AAAATACTAAGTGTT 615
consensus_7394#2 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||