cluster # 7406

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Schistosoma mansoni
cluster # 7406 cluster # 7406 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7406#0 length = 963 sequences # 3

consensus_7406#1 length = 576 sequences # 1
consensus_7406#2 length = 442 sequences # 1

consensusID : consensus_7406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 963
fasta sequence

                              [GGTGCAAACAAATAATCACAGTAAAAAGGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGATATGAATGCAGAGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGTGGCTAGTTCATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGTTGGCGTCTATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATCAATGTTACATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATTCACTTTATCTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAACCTTTTCACCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGACATTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGGTAAACTAACCG]

[+] EMBL CD084086             [GGTGCAAACAAATAATCACAGTAAAAAGGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD078735             [                                                                                                                                                                                                                                       GCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGATATGAATGCAGAGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGTGGCTAGTTCATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGTTGGCGTCTATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATCAATGTTACATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATTCACTTTATCTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAACCTTTTCACCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGG                                                                                                                                      ]
[+] EMBL CD136790             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATCTGAAAAAGATGACAGAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTTTAAAAGGTAAAAACCTTTTCAACATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGACATTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGGTAAACTAACCG]




>consensus_7406#0
GGTGCAAACAAATAATCACAGTAAAAAGGTACCTATTGAAACAAATCTTGTGGACATCGA
CTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGA
TATGAGGGATAACATTCCACAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTT
ACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGG
AAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTA
AAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTT
ATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGATATGAATGCAG
AGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGTGGCTAGTT
CATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGTTGGCGTCT
ATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATCAATGTTAC
ATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATTCACTTTAT
CTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACA
CGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAACCTTTTCA
CCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGACATTTTCC
ATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAG
ACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGGTAAACTAA
CCG

consensusID : consensus_7406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 576
fasta sequence

                              [CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAATTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACAGTTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGGTAAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAATCGACTGTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAGGTATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACTTTTATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGTAAAGTTTCCCTCTTTACCTCTTATGTAATTATATATCG]

[-] EMBL CD073197             [CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAATTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACAGTTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGGTAAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAATCGACTGTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAGGTATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACTTTTATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGTAAAGTTTCCCTCTTTACCTCTTATGTAATTATATATCG]




>consensus_7406#1
CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAG
ATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAA
TTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACA
GTTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACT
ATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGGT
AAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAATCGACT
GTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAGGT
ATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACTTT
TATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGTAA
AGTTTCCCTCTTTACCTCTTATGTAATTATATATCG

consensusID : consensus_7406#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [GGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGCCCGCTATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCGCTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGAT]

[-] EMBL CD087647             [GGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGCCCGCTATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCGCTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGAT]




>consensus_7406#2
GGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATT
ATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGCCCGC
TATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAGTGCAGA
TGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACT
TAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACAC
ACGAAATCTATCATCTCCATTGAGCGCTATTAAAGATTTACATTCAGATGATATTGTTGA
TGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGA
TGGCGTAATATGCTTGTATGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7406#0      --------------------------------GGTGCAAACAAATAATCACAGTAAAAAG 28
consensus_7406#2      -----------------------------------------------------------G 1
consensus_7406#1      CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAG 60
                                                                                 *

consensus_7406#0      GTACCTATTGAAACAAATCTTGTGGACATCGACT--ATTCACCTGGAATAAGTTCGCTA- 85
consensus_7406#2      GTACCTATTGAAACAAATCTTGTGGACATCGACT--ATTCACCTGGAATAAGTTCGCTA- 58
consensus_7406#1      ATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAA 120
                       *    *  *  * *** *** *  ****    *  *****    ** * *  *    * 

consensus_7406#0      -TTATGTTGTTC--TGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCC-ACA 141
consensus_7406#2      -TTATGTTGTTC--TGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCC-ACA 114
consensus_7406#1      TTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACA 180
                       ** *  *  **  *** *   **  * *   *    ***  *   * **   *** ***

consensus_7406#0      G----------------------------------------------------------- 142
consensus_7406#2      GCCCGCTATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAG 174
consensus_7406#1      GTTTTCCATTCAAA-TCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTAC 239
                      *                                                           

consensus_7406#0      TGCAGATGGCAGTC---TAATTTGTTGTGGTACAGA-----AGTTTACAGATTGAAAAAG 194
consensus_7406#2      TGCAGATGGCAGTC---TAATTTGTTGTGGTACAGA-----AGTTTACAGATTGAAAAAG 226
consensus_7406#1      TATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGG 299
                      *    * * *  **    ****  * ** **    *     * * * * ****    * *

consensus_7406#0      -AAAC--GTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAG 251
consensus_7406#2      -AAAC--GTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAG 283
consensus_7406#1      TAAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAA-TCGA 358
                       ****    **** *     ** * ***    **     *  * *  *   ***  **  

consensus_7406#0      TTAGTTTATTGGGACACACGAAATC--TATCATCTCCATTG-AGCACTATTAAAGATT-- 306
consensus_7406#2      TTAGTTTATTGGGACACACGAAATC--TATCATCTCCATTG-AGCGCTATTAAAGATT-- 338
consensus_7406#1      CTGTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAG 418
                       *  * ***      *    * ***  ***** **  * *  *   * * * *  ***  

consensus_7406#0      ---TACATTCAGATGATATTGTTGATGTAAAATTCGATCC-TAC---TTCTGTTCCCGGT 359
consensus_7406#2      ---TACATTCAGATGATATTGTTGATGTAAAATTCGATCC-TAC---TTCTGTTCCCGGT 391
consensus_7406#1      GTATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACT 478
                         *   **    ** * *****    * ***  ****   ***   ***  ** **  *

consensus_7406#0      TATTTACG----TCTAATGGATT---GTTCTGAAGATGGCGTAATATGCTTGTATGATAT 412
consensus_7406#2      TATTTACG----TCTAATGGATT---GTTCTGAAGATGGCGTAATATGCTTGTATGAT-- 442
consensus_7406#1      TTTATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGT 538
                      * * **      * * **  ***   *** *   *  **   * ***  ******  *  

consensus_7406#0      GAATGCAGAGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGT 472
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      AAAGTTTCCCTCTTTACCTCTTATGTAATTATATATCG---------------------- 576
                                                                                  

consensus_7406#0      GGCTAGTTCATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGT 532
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      TGGCGTCTATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATC 592
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      AATGTTACATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATT 652
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CACTTTATCTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAA 712
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      ATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAA 772
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CCTTTTCACCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGA 832
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      CATTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTAC 892
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      TATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGG 952
consensus_7406#2      ------------------------------------------------------------
consensus_7406#1      ------------------------------------------------------------
                                                                                  

consensus_7406#0      TAAACTAACCG 963
consensus_7406#2      -----------
consensus_7406#1      -----------