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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence
[TCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGAATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGCTCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAAAATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTNTGGAGCCACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCANATTAAGACGGGATTNCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAGTGTTGTCGCTGAAGATA-TAAA-TTTTCAA-TTATGTATCAATC-TATATCTCATACTTTT-GCCCATCTGATCTAGCTGATGAATTAACTGACNTAAA-GATTTCTGGCTTTCTATATTC-TTTTTAACCNGGNNATCCATGTGGNAAATAATATTTTT]
[+] EMBL CD082428 [TCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGAATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGCTCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAAAATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTNTGGAGCCACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCANATTAAGACGGGATTNCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAGTGTTGTCGCTGAAGATA TAAA TTTTCAA TTATGTATCAATC TATATCTCATACTTTT GCCCATCTGATCTAGCTGATGAATTAACTGACNTAAA GATTTCTGGCTTTCTATATTC TTTTTAACCNGGNNATCCATGTGGNAAATAATATTT ]
[-] EMBL CD076027 [ CCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGAATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGCTCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAAAATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTTTGGAGCCACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCAAATTAAGACGGGATTTCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAGTGTTGTCGCTGAAGATATTAAATTTTTCAATTTATGTATCAATCTTATATCTCATACTTTTGGCCAATCTGATCTAGCTGATGAATTAACTGAC TAAATGATTTCTGTCTTTCTATATTCTTTTTTAAACTGG TATTCATGT GTAAATAATAATTTT]
consensusID : consensus_7427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 536 fasta sequence
[AATGACTGAGCTACGTTAACTCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTAT-GGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGTAATAAACTGTCTCATTTTTATTCATTGTCTCATAGGAATACCAATGTTTGAAGTCACTGGTCTTGAGAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAACAACAATACTTGAACACTCTCCATCCTTAACTGGGATC]
[+] EMBL CD133374 [AATGACTGAGCTACGTTAACTCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTAT GGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGTAATAAACTGTCTCATTTTTATTCATTGTCTCATAGGAATACCAATGTTTGAAGTCACTGGTCTTGAGAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAACAACAATACTTGAACACTCTCCATCCTTAACTGGGATC]
[+] EMBL SMAA18523 [ GGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTAT GGTCAACCAAACGGGTGCCTCAACAACTGAGTATGCTAA ]
[+] EMBL SMAA18499 [ GGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTATGGGTCAACC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7427#0 --------------------TCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATG 40
consensus_7427#1 AATGACTGAGCTACGTTAACTCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATG 60
****************************************
consensus_7427#0 TCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTT 100
consensus_7427#1 TCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTT 120
************************************************************
consensus_7427#0 GATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAA 160
consensus_7427#1 GATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAA 180
************************************************************
consensus_7427#0 TTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACA 220
consensus_7427#1 TTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACA 240
************************************************************
consensus_7427#0 AGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGAC 280
consensus_7427#1 AGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGAC 300
************************************************************
consensus_7427#0 ATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAA 340
consensus_7427#1 ATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAA 360
************************************************************
consensus_7427#0 GTCATTCATTTCCGTAAAACTGTTGATG-------------------------------- 368
consensus_7427#1 GTCATTCATTTCCGTAAAACTGTTGATGTAATAAACTGTCTCATTTTTATTCATTGTCTC 420
****************************
consensus_7427#0 -----AATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAAC 423
consensus_7427#1 ATAGGAATACCAATGTTTGAAGTCACTGGTCTTGAGAA-TTCCGATGATATGACAAAAAC 479
********************************* *********************
consensus_7427#0 TGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGC 483
consensus_7427#1 TGTTCTTCCAATAAATAAA-CAACAATACTTGAACACTCTCCATCCTTAACTGGGATC-- 536
******************* ******************************** *****
consensus_7427#0 TCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAA 543
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 AATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTNTGGAGCC 603
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 ACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCANATT 663
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 AAGACGGGATTNCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAG 723
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 TGTTGTCGCTGAAGATATAAATTTTCAATTATGTATCAATCTATATCTCATACTTTTGCC 783
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 CATCTGATCTAGCTGATGAATTAACTGACNTAAAGATTTCTGGCTTTCTATATTCTTTTT 843
consensus_7427#1 ------------------------------------------------------------
consensus_7427#0 AACCNGGNNATCCATGTGGNAAATAATATTTTT 876
consensus_7427#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||