cluster # 7443

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Schistosoma mansoni
cluster # 7443 cluster # 7443 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7443#0 length = 505 sequences # 4

consensus_7443#1 length = 298 sequences # 1

consensusID : consensus_7443#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 505
fasta sequence

                              [TTGGCC-AGTACTTGGGTAGGATAATGGTAATATCTGTCCTGTTCGTAGTTCATGAAGATAGTTAGCACGTCCGAATTTAAATAACCCAAGTGATGAAGCTGCATCTTTATCGTTTCCGTCTACCCATGCATGTCTTAAGTTTTCTATGTTGCTTTGTTTTGAGGAAAGTAAAGCCTGTGACATTCTGTGTAAAGGAGCCATTCTCATATCCTTTCTGACTTCAAATTGTATAAATGGTCCACAGTCTGTACCAGAGATGGTATTAGTTTCCTTTCTGATTTCTGATTTCACAAGAAATCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGAGTTTTCAACTCTTCTTCCCTTTTCTTTTCTTGCTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTTCCTTCTTTTTACGTTCATTTTCTCTTTCCTCTTC-TTTTTTGCGCTGCTCTTCCTTACGTTTCAGACGCTTCTCTTCTTTCTTACGTTCCTCAGCA]

[+] EMBL CD129472             [TTGGCC AGTACTTGGGTAGGATAATGGTAATATCTGTCCTGTTCGTAGTTCATGAAGATAGTTAGCACGTCCGAATTTAAATAACCCAAGTGATGAAGCTGCATCTTTATCGTTTCCGTCTACCCATGCATGTCTTAAGTTTTCTATGTTGCTTTGTTTTGAGGAAAGTAAAGCCTGTGACATTCTGTGTAAAGGAGCCATTCTCATATCCTTTCTGACTTCAAATTGTATAAATGGTCCACAGTCTGTACCAGAGATGGTATTAGTTTCCTTTCTGATTTCTGATTTCACAAGAAATCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGAGTTTTCAACTCTTCTTCCCTTTTCTTTTCTTGCTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTTCCTTCTTTTTACGTTCATTTTCTCTTTCCTCTTC TTTTTTGCGCTGCTCTTCCTTACGTTTCAGACGCTTCTCTTCTTTCTTACGTTCCTCAGC ]
[+] EMBL CD129475             [  GGCCAAGTACTTGGGTAGGATAATGGTAATATCTGTCCTGTTCGTAGTTCATGAAGATAGTTAGCACGTCCGAATTTAAATAACCCAAGTGATGAAGCTGCATCTTTATCGTTTCCGTCTACCCATGCATGTCTTAAGTTTTCTATGTTGCTTTGTTTTGAGGAAAGTAAAGCCTGTGACATTCTGTGTAAAGGAGCCATTCTCATATCCTTTCTGACTTCAAATTGTATAAATGGTCCACAGTCTGTACCAGAGATGGTATTAGTTCCCTTTCTGATTTCTGATTTCACAAGAAATCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGAGTTTTCAACTCTTCTTCCCTTTTCTTTTCTTGCTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTTCCTTCTTTTTACGTTCATTTTCTCTTTCCTCTTCTTTTTTTGCGCCGCTCTTCCTTACGTTTCAGACGCTTCTCTTCTTTCTTACGTTCCTCAGC ]
[-] EMBL CD167980             [                                                                                                                                                                                                                                                                                     GATTTCTGATTTCACAAGAAATCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGAGTTTTCAACTCTTCTTCCCTTTTCTTTTCTTGCTCTTTTTGCAACTTATCTTCCTCTTTCTTGCGTTTTTCCTCTTCCTTCTTTTTACGTTCATTTTCTCTTTCCTCTTC TTTTTTGCGCTGCTCTTCCTTACGTTTCAGACGCTTCTCTTCTTTCTTACGTTCCTCAGCA]
[-] EMBL CD167944             [                                                                                                                                                                                                                                                                                                                                                                           CTTGCTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTTCCTTCTTTTTACGTTCATTTTCTCTTTCCTCTTC TTTTTTGCGCTGCTCTTCCTTACGTTTCAGACGCTTCTCTTCTTTCTTACGTTCCTCAGCA]




>consensus_7443#0
TTGGCCAGTACTTGGGTAGGATAATGGTAATATCTGTCCTGTTCGTAGTTCATGAAGATA
GTTAGCACGTCCGAATTTAAATAACCCAAGTGATGAAGCTGCATCTTTATCGTTTCCGTC
TACCCATGCATGTCTTAAGTTTTCTATGTTGCTTTGTTTTGAGGAAAGTAAAGCCTGTGA
CATTCTGTGTAAAGGAGCCATTCTCATATCCTTTCTGACTTCAAATTGTATAAATGGTCC
ACAGTCTGTACCAGAGATGGTATTAGTTTCCTTTCTGATTTCTGATTTCACAAGAAATCC
TAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGAGTTTTCAACTCTTCTTCCCTTTTCTT
TTCTTGCTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTTCCTTCTTTTT
ACGTTCATTTTCTCTTTCCTCTTCTTTTTTGCGCTGCTCTTCCTTACGTTTCAGACGCTT
CTCTTCTTTCTTACGTTCCTCAGCA

consensusID : consensus_7443#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [TATAAATGGTCCACAGTCTGTACCAGAGATAGTATTAGTTTCCTTTTTGCTCTCTGATTCNACAAGAAACCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGGGTTTTTAACTCTTCTTCCCTTTTCTTTCCTTGTTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTCTAAAACAAAAAATGAAGATATCAGCAAAGACAAAATCCTTCTTTTTACGCTCATTTTCTCTTTCCTCTTCTTTTTTGCGCTGCTCTTCCTTACGTTTCATACGCTTCTCTTCTTTT]

[-] EMBL CD181614             [TATAAATGGTCCACAGTCTGTACCAGAGATAGTATTAGTTTCCTTTTTGCTCTCTGATTCNACAAGAAACCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGGGTTTTTAACTCTTCTTCCCTTTTCTTTCCTTGTTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTCTAAAACAAAAAATGAAGATATCAGCAAAGACAAAATCCTTCTTTTTACGCTCATTTTCTCTTTCCTCTTCTTTTTTGCGCTGCTCTTCCTTACGTTTCATACGCTTCTCTTCTTTT]




>consensus_7443#1
TATAAATGGTCCACAGTCTGTACCAGAGATAGTATTAGTTTCCTTTTTGCTCTCTGATTC
NACAAGAAACCCTAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGGGTTTTTAACTCTTC
TTCCCTTTTCTTTCCTTGTTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTC
TCTAAAACAAAAAATGAAGATATCAGCAAAGACAAAATCCTTCTTTTTACGCTCATTTTC
TCTTTCCTCTTCTTTTTTGCGCTGCTCTTCCTTACGTTTCATACGCTTCTCTTCTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7443#0      TTGGCCAGTACTTGGGTAGGATAATGGTAATATCTGTCCTGTTCGTAGTTCATGAAGATA 60
consensus_7443#1      ------------------------------------------------------------
                                                                                  

consensus_7443#0      GTTAGCACGTCCGAATTTAAATAACCCAAGTGATGAAGCTGCATCTTTATCGTTTCCGTC 120
consensus_7443#1      ------------------------------------------------------------
                                                                                  

consensus_7443#0      TACCCATGCATGTCTTAAGTTTTCTATGTTGCTTTGTTTTGAGGAAAGTAAAGCCTGTGA 180
consensus_7443#1      ------------------------------------------------------------
                                                                                  

consensus_7443#0      CATTCTGTGTAAAGGAGCCATTCTCATATCCTTTCTGACTTCAAATTGTATAAATGGTCC 240
consensus_7443#1      ------------------------------------------------TATAAATGGTCC 12
                                                                      ************

consensus_7443#0      ACAGTCTGTACCAGAGATGGTATTAGTTTCCTTTCTGATTTCTGATTTCACAAGAAATCC 300
consensus_7443#1      ACAGTCTGTACCAGAGATAGTATTAGTTTCCTTTTTGCTCTCTGATTCNACAAGAAACCC 72
                      ****************** *************** ** * *******  ******** **

consensus_7443#0      TAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGAGTTTTCAACTCTTCTTCCCTTTTCTT 360
consensus_7443#1      TAACAAAACTGCCCGTTGTTTTTCTTCTCTCTGGGTTTTTAACTCTTCTTCCCTTTTCTT 132
                      ********************************* ***** ********************

consensus_7443#0      TTCTTGCTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCT----------- 409
consensus_7443#1      TCCTTGTTCTTTTTGCAACTTTTCTTCCTCTTTCTTGCGTTTTTCCTCTCTAAAACAAAA 192
                      * **** ******************************************           

consensus_7443#0      -------------------------TCCTTCTTTTTACGTTCATTTTCTCTTTCCTCTTC 444
consensus_7443#1      AATGAAGATATCAGCAAAGACAAAATCCTTCTTTTTACGCTCATTTTCTCTTTCCTCTTC 252
                                               ************** ********************

consensus_7443#0      TTTTTTGCGCTGCTCTTCCTTACGTTTCAGACGCTTCTCTTCTTTCTTACGTTCCTCAGC 504
consensus_7443#1      TTTTTTGCGCTGCTCTTCCTTACGTTTCATACGCTTCTCTTCTTTT-------------- 298
                      ***************************** ***************               

consensus_7443#0      A 505
consensus_7443#1      -