These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 472 fasta sequence [ACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGCCACGTCTTGTTGCGGTCACGCGTCGACGTCACGAGAACTATACTCCCGTCTGAGTCAGATAGCAGATCCAATTCACAAATACACTCGATCGCTCACATCTCTCGATACAACTGCACCTCTTCACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAGTTCTTCATACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGTCTAGTCCGTTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTGGACGTCTTCACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA] [+] EMBL CD121483 [ACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGCCACGTCTTGTTGCGGTCACGCGTCGACGTCACGAGAACTATACTCCCGTCTGAGTCAGATAGCAGATCCAATTCACAAATACACTCGATCGCTCACATCTCTCGATACAACTGCACCTCTTCACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAGTTCTTCATACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGTCTAGTCCGTTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTGGACGTCTTCACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA] consensusID : consensus_7461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 446 fasta sequence [TAATTTATGTTGTGTACAATATAATATTT-AAT-AAC-AATGAAAGAGAATTAGGTAG-AAAAATAATGTTTAGATTTTGTTA-TTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTTTGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAGAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTGTTGATACTTTAAATGCATCAGAAGTAGGATGGAAAATACAAAATATGAATAGGACAGTAATCA] [-] EMBL AA774381 [TAATTTATGTTGTGTACAATATAATATTTAAATAAACAAATGAAAGAGAATTAGGTAGAAAAAATAATGTTTAGATTTTGTTATTTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTTTGG ] [-] EMBL AI975368 [ GTACAATATAATATTT AAT AAC AATGAAAGAGAATTAGGTAG AAAAATAATGTTTAGATTTTGTTA TTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTTTGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAAAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTGTTGATACTTTAAATGCATCAGAAGTAGGATGGAAAATACAAAATATGAATAGGACAGTAATCA] [+] EMBL CD063324 [ ATTACAAATATTTTTTATTTGTTCAGAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTATTGATACTTTAAATGCATCAGAAGTAGGATGGAAAATACAAAATATGAATAGGACAG ] [+] EMBL AI975859 [ GAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTGTTGATACTTTAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7461#0 -ACTCAAAAATACACTCGCTCACTCACATC-TCTCGATACAACTACACCTCTTCACAGTC 58 consensus_7461#1 TAATTTATGTTGTGTACAATATAATATTTAATAACAATGAAAGAGAATTAGGTAGAAAAA 60 * * * * * * * * * * ** ** * * * consensus_7461#0 CACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGC 118 consensus_7461#1 TAATGTTTAGATTTTGTTATTTTCTTGGAT-TGTAAACATCTTAACCTCAGTAGACTTGC 119 * * * * ** * * * * * ** ** *** * ** ** consensus_7461#0 -CACGTCTTGTTGCGGTCACGCGTC-GACGTCACGAG-AACTATACTCCCGTCTGAGTCA 175 consensus_7461#1 ATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCT 179 ** ** * ** ** * * * ** * **** * * * ** consensus_7461#0 --GATAGCAGATCCAATTCACAAATACACTCGATCGCTCACATCT-CTCGATACAACTGC 232 consensus_7461#1 TTGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAGAAGAGATGA 239 * ** * * * * ** ** * ** * ** * * ** consensus_7461#0 ACCTCTTCACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAG 292 consensus_7461#1 A--TGTACACAGTTTTTTAGCACC--CATCATGTATACATCAC-GCCAATAC-----AAA 289 * * * ****** * * ** * ** *** *** * * * ** consensus_7461#0 TTCTTCATACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGT 352 consensus_7461#1 TCATCCATAA-AATAGT-GTGCTAAACTAAGTCCTGA-TAGACATAATCTACATTCTAAA 346 * * **** * *** * * * * ** ** * * * *** * ** consensus_7461#0 CTAGTCCGTTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTG 412 consensus_7461#1 GTAACGTTTTGCATCTCATAGTCATTTTC-TTCGACTGTTGATA-CTTTAAATGC-ATCA 403 ** *** *** ** ** * * **** *** *** ** * ** * * consensus_7461#0 GACGTCTTCACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA 472 consensus_7461#1 GAAGTAGG-ATGGAAAATACAAAATATGAATAG--GACAGTAATCA-------------- 446 ** ** * * ** * * * * * * ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||