These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 811 fasta sequence [AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATATACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATT-AAGCAATGTCAGCTAATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACTACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCATATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACACCTGAATCTGTTTGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCGAAACTGAGAAGGACATACTGTCGATTCTAATCAAGAAATGTAATGCGCTTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTGATGAAAAAAAAAAAAAAAAAAACTCGCGACTAGTTCT] [+] EMBL AF527011 [AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATATACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATT AAGCAATGTCAGCTAATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACTACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCATATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACACCTGAATCTGTTTGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCGAAACTGAGAAGGACATACTGTCGATTCTAATCAAGAAATGTAATGCGCTTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTGATGAAAAAAAAAAAAAAAAAAACTCGCGACTAGTTCT] [-] EMBL AW146468 [ TGGCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATATACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATTGAATCCATTTCGGCccgaaa ] [+] EMBL AI740231 [ GCAAAAGCGTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGANCATTTCATCTTGAACATGACATCCTTGTGGAGACATCATCCCAACCNCNAAAACGGTTCACGTCTTTCTAGAAAATGTGGATGAAGAtt ] [+] EMBL AY028436 [ ATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACTACATCGGATTCATGCAAATATTGTCTACAATTGTACGATGAAACGTATGAGAGGGGTTCATATATTGAAGTCTACAAAAGCGTTGGCTCACTCTCACCACCATGGACACCTGGATCTGTTTGTGTACCCTTCGTAAATGACACGAAGAGAGAGCGTCCATACTGGTATTTATTTGACAACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCGAAACGGAGAAGGACATACTGTCGATTCTAATCAAGAAATGTAATGCGCTTATAATTCTTGTGTGCTCTTAACTAAATATATGCATATGAACTGATGAAAAAAAA ] consensusID : consensus_7474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [AGAGAGGAAGGGTTACAGAGAAGTTCCCCCCCAGATAAACAAAGCCACGAAATCGAGGTTCTTATGCCGTATGTCAACACATGATAAGCCAATGGGATAACCACACCGGATCCAGCAAAAAATGTCTACAATTGTACGATGAAACGTATGAGAGGGGTCATATAATGAAGTCTACAAAAGCGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGTTGTGTACCCTTCGTAAATGACACGGAAGAGAGAGCGTCCATACTGGTATTATTGACTTCGGCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCCGATTCAAAGGCATTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCCGAAACTGAGAAGGACATACTGTCCGTTCTAATCCAAGGAAATGTAATGCGCCTTATAATTCTTGTGTGCTCTTAACTAAATATACGCATAT] [-] EMBL AI820476 [AGAGAGGAAGGGTTACAGAGAAGTTCCCCCCCAGATAAACAAAGCCACGAAATCGAGGTTCTTATGCCGTATGTCAACACATGATAAGCCAATGGGATAACCACACCGGATCCAGCAAAAAATGTCTACAATTGTACGATGAAACGTATGAGAGGGGTCATATAATGAAGTCTACAAAAGCGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGTTGTGTACCCTTCGTAAATGACACGGAAGAGAGAGCGTCCATACTGGTATTATTGACTTCGGCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCACGAAATCCCGATTCAAAGGCATTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAAAAGTTGAATGTATCAATCAACCCGAAACTGAGAAGGACATACTGTCCGTTCTAATCCAAGGAAATGTAATGCGCCTTATAATTCTTGTGTGCTCTTAACTAAATATACGCATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7474#0 AATTCGGCACGAGCTAGTCTCGAGTTTTTTTTTTTTTTTTTTTTACGAAATGGCAAAAGC 60 consensus_7474#1 ------------------------------------------------------------ consensus_7474#0 GTATTTATTTATATCAGAGTAGTCATACAATAATAAATAAATATGAGATCATTTCATCTT 120 consensus_7474#1 ------------------------------------------------------------ consensus_7474#0 GAACATGACATCCTTGTGGAGACATCATCCAAACCTCAAAAACGGTTCACGTCTTTCTAG 180 consensus_7474#1 ------------------------------------------------------------ consensus_7474#0 AAAATGTGGATGAAGAGGTTCTCCATCCACAATGCTAAAGTAAATGCAATATAGAAATAT 240 consensus_7474#1 ------------------------------------------------------------ consensus_7474#0 ACAGAAGAGAATGGTTTTGATCAGTAGATGTTTCACTGCATAGATTAAGCAATGTCAGCT 300 consensus_7474#1 --AGAGAGGAAGGGTTACAG-----AGAAGTTCCCCCCCAGA---TAAACAAAGCCA-CG 49 *** *** **** *** *** * * ** * *** *** * ** * consensus_7474#0 AATTCGATGTTTCTTATTGCCGTATTGTCATACACATTGATAAGTCAATTGGGGATAACT 360 consensus_7474#1 AAATCGAGGTT-CTTAT-GCCGTAT-GTCA-ACACAT-GATAAGCCAAT--GGGATAACC 102 ** **** *** ***** ******* **** ****** ****** **** ******** consensus_7474#0 ACATCGGATTCATGCAAATATTGTCTACAAATGTACGATGAAACGTATGAGAGGGGGTCA 420 consensus_7474#1 ACACCGGATCCA-GCAAAAAATGTCTACAATTGTACGATGAAACGTATGAGAGGGG-TCA 160 *** ***** ** ***** * ********* ************************* *** consensus_7474#0 TATATTGANGTCTACAAAAGCGTGGGGTCACTCTCACCACCATGGACA-CCTGAATCTGT 479 consensus_7474#1 TATAATGAAGTCTACAAAAGCGGTTGCTCACTCTCACCACCATGGACAACCTGGAACTGT 220 **** *** ************* * ********************* **** * **** consensus_7474#0 TTGTGTACCCTTCGTAAATGACACG-AAGAGAGAGCGTCCATACTGGTATTTATTTGACA 538 consensus_7474#1 T-GTGTACCCTTCGTAAATGACACGGAAGAGAGAGCGTCCATACTGGTATT--ATTGACT 277 * *********************** ************************* ***** consensus_7474#0 ACGTCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCA 598 consensus_7474#1 TCGGCAATTACACAGGTCGGATTACTGGTCTCGGACATGGTACCTGCATTGATGACTTCA 337 ** ******************************************************** consensus_7474#0 CGAAATCCGGATTCAAAGGCATTTCCTCTATTAAACGGTGTATTCAAACAAAGGATGGAA 658 consensus_7474#1 CGAAATCCCGATTCAAAGGCATT-CCTCTATTAAACGGTGTATTCAAACAAAGGATGGAA 396 ******** ************** ************************************ consensus_7474#0 AAGTTGAATGTATCAATCAACC-GAAACTGAGAAGGACATACTGTCGATTCTAATC--AA 715 consensus_7474#1 AAGTTGAATGTATCAATCAACCCGAAACTGAGAAGGACATACTGTCCGTTCTAATCCAAG 456 ********************** *********************** ******** * consensus_7474#0 GAAATGTAATGCGC-TTATAATTCTTGGGGGGTTTTAACTAAATATATGCATATGAACTG 774 consensus_7474#1 GAAATGTAATGCGCCTTATAATTCTTGTGTGCTCTTAACTAAATATACGCATAT------ 510 ************** ************ * * * ************* ****** consensus_7474#0 ATGAAAAAAAAAAAAAAAAAAACTCGCGACTAGTTCT 811 consensus_7474#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||