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Schistosoma mansoni
cluster # 7484 cluster # 7484       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7484#0 length = 513 sequences # 2  
consensus_7484#1 length = 388 sequences # 1  
consensus_7484#2 length = 356 sequences # 1  
consensus_7484#3 length = 327 sequences # 1  

consensusID : consensus_7484#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 513
fasta sequence
                              [AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC-GAACCGGTTCCTGTGACTGTGCAACCGTCACTCCTAAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT]

[+] EMBL CD193019             [AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC GAACCGGTTCCTGTGACTGTG                                                                                                           ]
[+] EMBL SMRAP061             [                                                                                                                                                                                                                                                                                       ACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGRBCGGAACCGGTTCCTGTGACTGABCAACCGTCACTCCTAAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT]


>consensus_7484#0 AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACT GTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACC AGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGA AAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCA AGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGT GGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGC TTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGCAACCGTCACTCCT AAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCG TTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT



consensusID : consensus_7484#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence
                              [ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGA]

[+] EMBL CD069426             [ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGA]


>consensus_7484#1 ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCC ACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGT TGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGG CAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACA CCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGT ACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCT AAGATCGAACCGGTTCCTGTGACTGTGA



consensusID : consensus_7484#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence
                              [GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA]

[+] EMBL CD194733             [GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA]


>consensus_7484#2 GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCC TGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAG TGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGG TCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTT GTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCG CTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA



consensusID : consensus_7484#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence
                              [CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGG]

[+] EMBL CD168534             [CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGG]


>consensus_7484#3 CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGA TTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCA AACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGAC CAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAG ACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGC AGCCACCGAAACCCATCCAAACATTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7484#1      ------------------------------------------------------------
consensus_7484#3      ------------------------------------------------------------
consensus_7484#0      AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACT 60
consensus_7484#2      ------------------------------------------------------------
                                                                                  

consensus_7484#1      ------------------------------------------------------------
consensus_7484#3      ------------------------------------------------------------
consensus_7484#0      GTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACC 120
consensus_7484#2      ------------------------------------------------------------
                                                                                  

consensus_7484#1      ------------------------------------------------------------
consensus_7484#3      -------------------------------------------------------CACGG 5
consensus_7484#0      AGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGA 180
consensus_7484#2      ---GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGT 57
                                                                                  

consensus_7484#1      -----------------------------------------ATTGTGCATGGTGGATTCT 19
consensus_7484#3      TACCCTGCCATCACCGACTGCACCTTTCGTGAAG-AGACCAATTGTGCATGGTGGATTCT 64
consensus_7484#0      AAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAG-AGACCGAATGTGAATACTGAAGTGC 239
consensus_7484#2      TCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGC 117
                                                               * **** **  ** * *  

consensus_7484#1      TGGAG--TGAGATACATGCACCAGTTGT---TCCAGTCCAGCAGCCACCGAAACCC-ATC 73
consensus_7484#3      TGGAG--TGAGATACATGCACCAGTTGT---TCCAGTCCAGCAGCCACCGAAACCC-ATC 118
consensus_7484#0      AAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAG 299
consensus_7484#2      AAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAG 177
                        * *  *  * *     **** *****   **    *   **        ***   *  

consensus_7484#1      CAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCG 133
consensus_7484#3      CAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCG 178
consensus_7484#0      TGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGA--- 356
consensus_7484#2      TGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGA--- 234
                          *    * ** ****** *   * *** *     **  ***  *   * * **    

consensus_7484#1      ACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGA 193
consensus_7484#3      ACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTG-CAGCTTTCGTG-A 236
consensus_7484#0      --TGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTC--CTG-TGACT---GTGCA 408
consensus_7484#2      --TGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTC--CTG-TGACT---GTGAA 286
                          *  *****      **  ** **  *      * ***   **    **   * * *

consensus_7484#1      AAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGT--CAG 251
consensus_7484#3      AGAGACCAATTGTGCATGGTGGATTCTTGGAG--TGAGATACATGCACCAGTTGTTCCAG 294
consensus_7484#0      ACCGTCA----CTCCTAAACAAARGGTAAAGGGTTAAARGCTATG--ATGGRGAR-A-GG 460
consensus_7484#2      AACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTG--TCAGACAA-CCAG 343
                      *  * *                *           *               *        *

consensus_7484#1      TCTGACCAC-ACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTG 310
consensus_7484#3      TCCAGCAGCCACCGAAACCCATCCAAACATTGG--------------------------- 327
consensus_7484#0      CGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT------- 513
consensus_7484#2      TGAACTAGTGAAA----------------------------------------------- 356
                                                                                  

consensus_7484#1      GACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAAC 370
consensus_7484#3      ------------------------------------------------------------
consensus_7484#0      ------------------------------------------------------------
consensus_7484#2      ------------------------------------------------------------
                                                                                  

consensus_7484#1      CGGTTCCTGTGACTGTGA 388
consensus_7484#3      ------------------
consensus_7484#0      ------------------
consensus_7484#2      ------------------
                                        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)