These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 513 fasta sequence [AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC-GAACCGGTTCCTGTGACTGTGCAACCGTCACTCCTAAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT] [+] EMBL CD193019 [AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACCAGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATC GAACCGGTTCCTGTGACTGTG ] [+] EMBL SMRAP061 [ ACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGRBCGGAACCGGTTCCTGTGACTGABCAACCGTCACTCCTAAACAAARGGTAAAGGGTTAAARGCTATGATGGRGARAGGCGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT] consensusID : consensus_7484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence [ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGA] [+] EMBL CD069426 [ATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGAAAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGTCAGTCTGACCACACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGA] consensusID : consensus_7484#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA] [+] EMBL CD194733 [GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGCAAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTGTCAGACAACCAGTGAACTAGTGAAA] consensusID : consensus_7484#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGG] [+] EMBL CD168534 [CACGGTACCCTGCCATCACCGACTGCACCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAGAGACCAATTGTGCATGGTGGATTCTTGGAGTGAGATACATGCACCAGTTGTTCCAGTCCAGCAGCCACCGAAACCCATCCAAACATTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7484#1 ------------------------------------------------------------ consensus_7484#3 ------------------------------------------------------------ consensus_7484#0 AATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTCCTGTGACT 60 consensus_7484#2 ------------------------------------------------------------ consensus_7484#1 ------------------------------------------------------------ consensus_7484#3 ------------------------------------------------------------ consensus_7484#0 GTGAAAACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAAGTCTGTGTCAGACAACC 120 consensus_7484#2 ------------------------------------------------------------ consensus_7484#1 ------------------------------------------------------------ consensus_7484#3 -------------------------------------------------------CACGG 5 consensus_7484#0 AGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCGACCAGTGTGTCAGTGAAGTCGCCCGA 180 consensus_7484#2 ---GTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGT 57 consensus_7484#1 -----------------------------------------ATTGTGCATGGTGGATTCT 19 consensus_7484#3 TACCCTGCCATCACCGACTGCACCTTTCGTGAAG-AGACCAATTGTGCATGGTGGATTCT 64 consensus_7484#0 AAGTGTGCTTGATTCGACTGCAGCTTTCGTGAAG-AGACCGAATGTGAATACTGAAGTGC 239 consensus_7484#2 TCCTGTGACTGTGAAAACGTCGAATGTCGCTATGCAGACCGAATGTGAATACTGAAGTGC 117 * **** ** ** * * consensus_7484#1 TGGAG--TGAGATACATGCACCAGTTGT---TCCAGTCCAGCAGCCACCGAAACCC-ATC 73 consensus_7484#3 TGGAG--TGAGATACATGCACCAGTTGT---TCCAGTCCAGCAGCCACCGAAACCC-ATC 118 consensus_7484#0 AAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTAGAACGGGAAG 299 consensus_7484#2 AAGTGGATAGGGTGAGCACACCGGTTGTCAGTCTGACCACACACAAGTTGGAACGGGAAG 177 * * * * * **** ***** ** * ** *** * consensus_7484#1 CAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCG 133 consensus_7484#3 CAAACATTGGAAGCCTGTGTGCAGACGGTGAAGGAAAGTGTGTGTGTTGTGGATAGTGCG 178 consensus_7484#0 TGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGA--- 356 consensus_7484#2 TGGTCGAGAGGAGTCTGTGTACCAGCTGTGGACATCGGTACGTGAATACCGAAGAGA--- 234 * * ** ****** * * *** * ** *** * * * ** consensus_7484#1 ACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCCAATGGCAGCTTTCGGGGA 193 consensus_7484#3 ACCAGTGTGTCAGTGAAGTCGCCCGAAAGTGTGCTTGATTCGACTG-CAGCTTTCGTG-A 236 consensus_7484#0 --TGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTC--CTG-TGACT---GTGCA 408 consensus_7484#2 --TGGCTTGTCAAACCGTTCAGCCTAAGATCGAACCGGTTC--CTG-TGACT---GTGAA 286 * ***** ** ** ** * * *** ** ** * * * consensus_7484#1 AAAGACCGATTGTGATTGCTGAATTGCAAGTGGTTAGGGTGAGCACACCGGTGGT--CAG 251 consensus_7484#3 AGAGACCAATTGTGCATGGTGGATTCTTGGAG--TGAGATACATGCACCAGTTGTTCCAG 294 consensus_7484#0 ACCGTCA----CTCCTAAACAAARGGTAAAGGGTTAAARGCTATG--ATGGRGAR-A-GG 460 consensus_7484#2 AACGTCGAATGTCGCTATGCAGACCAGCAAGTTCTCAGGTCTGTG--TCAGACAA-CCAG 343 * * * * * * * consensus_7484#1 TCTGACCAC-ACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTACCAGCTGTG 310 consensus_7484#3 TCCAGCAGCCACCGAAACCCATCCAAACATTGG--------------------------- 327 consensus_7484#0 CGAACTTGTTCCTTTGGCCGTTGTTTTAGCTTTACTTAAAGGGGCAAWTGTTT------- 513 consensus_7484#2 TGAACTAGTGAAA----------------------------------------------- 356 consensus_7484#1 GACATCGGTACGTGAATACCGAAGAGATGGCTTGTCAAACCGTTCAGCCTAAGATCGAAC 370 consensus_7484#3 ------------------------------------------------------------ consensus_7484#0 ------------------------------------------------------------ consensus_7484#2 ------------------------------------------------------------ consensus_7484#1 CGGTTCCTGTGACTGTGA 388 consensus_7484#3 ------------------ consensus_7484#0 ------------------ consensus_7484#2 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||