cluster # 7493

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Schistosoma mansoni
cluster # 7493 cluster # 7493 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7493#0 length = 775 sequences # 2
consensus_7493#1 length = 286 sequences # 1

consensus_7493#2 length = 238 sequences # 1
consensus_7493#3 length = 117 sequences # 1

consensusID : consensus_7493#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 775
fasta sequence

                              [TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTTTCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGAGTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTCAGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCGGTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAGTGATCTCAATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGGTCACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTACCGCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTA-GGTCGACCTTTTCTAACCCCACCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAGGAACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCACCACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT]

[+] EMBL CD086184             [TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTTTCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGAGTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTCAGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCGGTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAGTGATCTCAATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGGTCACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTACCGCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTA GGTCGACCTTTTCTAACCCCACCCCTCCTTGTGGGAAGGCAGCA                                                                                                                                                                                                                                                                          ]
[+] EMBL CD068199             [                                                                                                                                                                                                                                                                                                                                                                                                                      aaaaaaacCTTA CGCCGGAGACGGATATCCGTGGGATAAGGCGAGGTGTGCATTTTTACGGTCGACCTTTTCTAACCCCAGCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACACCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGTTTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAGGAACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCACCACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT]




>consensus_7493#0
TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTT
TCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGA
GTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTC
AGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCG
GTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAG
TGATCTCAATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGGT
CACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTACC
GCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTAGGTCGACCTTTTCTA
ACCCCACCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAACA
CCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGGT
TTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAGG
AACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCACC
ACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT

consensusID : consensus_7493#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [CCCCAAATACTCTTGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCACCATATCCACTATCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG]

[+] EMBL CD128791             [CCCCAAATACTCTTGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCACCATATCCACTATCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG]




>consensus_7493#1
CCCCAAATACTCTTGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAG
GCCTCATCGAAGCCACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCA
CCATATCCACTATCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTAC
CCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACCAATGGCTACTAAGAAG
ACGAGTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG

consensusID : consensus_7493#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 238
fasta sequence

                              [CATATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACACTCGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACATGACATGACTATTCGGGTGGTTACGGTGGCGGCTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGCGGAGGCTGCACTGATGGCGACTGTGGCGGCGTCTATGGTGGAGGATGCAGTG]

[+] EMBL CD129775             [CATATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACACTCGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACATGACATGACTATTCGGGTGGTTACGGTGGCGGCTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGATATGGCGGAGGCTGCACTGATGGCGACTGTGGCGGCGTCTATGGTGGAGGATGCAGTG]




>consensus_7493#2
CATATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACA
CTCGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACATGACATGACTATTCG
GGTGGTTACGGTGGCGGCTGCTATGGTAGCGATTGTGATAGCGGTTATGGCGATAGTGGA
TATGGCGGAGGCTGCACTGATGGCGACTGTGGCGGCGTCTATGGTGGAGGATGCAGTG

consensusID : consensus_7493#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [ATAGCGGTTATGGCGATCAGTGGATATGGTGGGCGGCTGTACTGGTGGTGACTGTGGCGGCAGCTATGGTGGTGGCTTCGATGAGGCCTTCCCTGCCCCCTATGGCGGTGATTCTTG]

[+] EMBL CD167595             [ATAGCGGTTATGGCGATCAGTGGATATGGTGGGCGGCTGTACTGGTGGTGACTGTGGCGGCAGCTATGGTGGTGGCTTCGATGAGGCCTTCCCTGCCCCCTATGGCGGTGATTCTTG]




>consensus_7493#3
ATAGCGGTTATGGCGATCAGTGGATATGGTGGGCGGCTGTACTGGTGGTGACTGTGGCGG
CAGCTATGGTGGTGGCTTCGATGAGGCCTTCCCTGCCCCCTATGGCGGTGATTCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7493#2      ------------------------------------------------------------
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      ------------------------------------------------------------
consensus_7493#0      TTATTTACAAATTAAGCCATTATTTAATCTTATGTGATTCAATAGTTTCTCATTTCTTTT 60
                                                                                  

consensus_7493#2      ----------------------------------------------------------CA 2
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      -----------------------------------------------CCCCAAATACTCT 13
consensus_7493#0      TCAAAAAGTTTATTTCTTATCTGTACACAGCAGTTAGTGGTTGTAGTTTTTATATATTGA 120
                                                                                  

consensus_7493#2      TATCAGGGGGGGGAGTGCAACAACACCAACAATTTGAAAAAAGAAACAGACACTCACACT 62
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      TGAGCTCACCGTAATTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGC 73
consensus_7493#0      GTGTGGAAGCATATTTTTTAAATACTCTTGGATATCTAATATGTTATTTGAACAATGGTC 180
                                                                                  

consensus_7493#2      CGTCTTCTTAGTAGCCATTGGATACGCCACCGCCTACACCACAT--GACATGACTATTCG 120
consensus_7493#3      -------------------------------------ATAGCG---GTTATGGCGATC-- 18
consensus_7493#1      CACCTCCACAATTGCCGCCGCCACAGTCACCACCAGTACAGCCTCCACCATATCCACTAT 133
consensus_7493#0      AGTCTTGAATATAGTGGTCTTGAGTGCTGTTAAAGGTATGAGGGCAGTTATTACTTCCCG 240
                                                           *           **  *      

consensus_7493#2      GGTGGTTACGGTG-G---CGGCTGCTATGGTAGCGATTGTGATAGCGGTTA------TGG 170
consensus_7493#3      AGTGGATATGGTG-GG--CGGCTGTACTGGTGGTGACTGTGGCGGCAGCTA------TGG 69
consensus_7493#1      CGCCATAACCGCT-ATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAG 192
consensus_7493#0      GTTGCCCACACCGTGGAAGGGTTTTTCTAGAGGTACCTTAAAAGGAAATTGGGTTAGAAG 300
                             *                        *           *              *

consensus_7493#2      CGATA----GTGGATATGGCG-GAGGCTGCACTGAT-----GGCGACTG--TGGCGGCGT 218
consensus_7493#3      TG-------GTGGCTTCGATG-AGGCCTTCCCTGC--------CCCCTA--TGGCGGTGA 111
consensus_7493#1      TCATGTGATGTGGTGTGGGCG-GTGGCGTAACCAAT-----GGCTACTA--AGAAGACGA 244
consensus_7493#0      TGATCTCA-ATGACCTGAGAGCGTGACCACAGTGCTCAAGGGACAACTGCTTGAGGTCGG 359
                                **        *   * *                *  **    *  *  * 

consensus_7493#2      CTATGGTGGAGGATGCAGTG---------------------------------------- 238
consensus_7493#3      TTCTTG------------------------------------------------------ 117
consensus_7493#1      GTGTGAGTGACTGTTTCATTTCTCAAATTGTTGGTGTTGTTG------------------ 286
consensus_7493#0      TCACACACGATCTTTTTGTGGGTAGTTTCTGTGTTAGCTCCGTACTTGTTGGGATCTTAC 419
                                                                                  

consensus_7493#2      ------------------------------------------------------------
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      ------------------------------------------------------------
consensus_7493#0      CGCCGGAGACAGATATCCATGGAATAAGGCGAGGTGTGCATTTTTAGGTCGACCTTTTCT 479
                                                                                  

consensus_7493#2      ------------------------------------------------------------
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      ------------------------------------------------------------
consensus_7493#0      AACCCCACCCCTCCTTGTGGGAAGGCAGCATCGCTGTCATGCTGGTTGTCTGAAGGAAAC 539
                                                                                  

consensus_7493#2      ------------------------------------------------------------
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      ------------------------------------------------------------
consensus_7493#0      ACCTTACTGCTATCACACCTCTGTACAGTCAGCAGTACGACTTCGCCTTCGGACCTTGGG 599
                                                                                  

consensus_7493#2      ------------------------------------------------------------
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      ------------------------------------------------------------
consensus_7493#0      TTTGCTGCTTTTAGTCTCACCGCTCTTCAACCGACCTGTCTGGCATGGTAGGACCTCGAG 659
                                                                                  

consensus_7493#2      ------------------------------------------------------------
consensus_7493#3      ------------------------------------------------------------
consensus_7493#1      ------------------------------------------------------------
consensus_7493#0      GAACGATTGTTCCAGCCAGCATAGCTCGACTGCTTCATCACGATAGGCAAGCCCGATCAC 719
                                                                                  

consensus_7493#2      --------------------------------------------------------
consensus_7493#3      --------------------------------------------------------
consensus_7493#1      --------------------------------------------------------
consensus_7493#0      CACGTCAAGGTAGCAGCAACGGTCGGCCAATCTCAGAAGAGGGATTTGCTCACAAT 775