cluster # 7518

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Schistosoma mansoni
cluster # 7518 cluster # 7518 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7518#0 length = 439 sequences # 2

consensus_7518#1 length = 397 sequences # 3

consensusID : consensus_7518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 439
fasta sequence

                              [AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACTTTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGCTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAAATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATACTAGCACGATTTCAAATGG]

[+] EMBL CD150149             [AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACTTTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGCTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAAATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATACTAGCACGATTTCAAATGG]
[+] EMBL CD150250             [AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGAGTTTAAAATGAACAATGTATTCACTTTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGCTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAGATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATACTAGCACGGTTTCAAATGG]




>consensus_7518#0
AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTG
CTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACTT
TAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATGC
TTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAGATGAAATT
ACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAATAT
TTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGACCAC
AGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTCATA
CTAGCACGATTTCAAATGG

consensusID : consensus_7518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 397
fasta sequence

                              [TAACAACCATTTCCGATATCTAATATATCAGTTGGGACTAAGTGACCTCGTGGATCTGTAAAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAGGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCAATATCAGGAAGGCTAGCTTGATGAGGAGAAGACTGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTACGATGATGAAGTGAAGAGGATGGTGAGTCTGATTCATTATAATTTGTAACCGATGCTCCTGAGTAGTTTCCTGAAGAAA]

[-] EMBL CD197510             [TAACAACCATTTCCGATATCTAATATATCAGTTGGGACTAAGTGACCTCGTGGATCTGTAAAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAGGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCAATATCAGGAAGGCTAGCTTGATGAGGAGAAGACTGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTACGATGATGAAGTGAAGAGGATGGTGAGTCTGATTCATTATAATTTGTAACCGATGCTCCTGAGTAGTTTCCTGAAGAAA]
[+] EMBL CD062625             [                                                    GATCTGTAAAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACTGCGGGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAAGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCAATATCAGGAAGGCTACCTTGATGAGGACAAGACTGAATAGTTGTCCTATAACACACATTCCAT                                                                                              ]
[-] EMBL CD062608             [                                                        acccAATGCAACTTC   GGGATCTGTACCGGTATTTGATTGAGGACGACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTACATAATGCAGGATAGGTTGTATTAACAATTAAACGACCAAAGCCAGAAAGACAACGAGCCATATCAGGAAGGCTAGCTTGATGAGGAGAAAAATGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTg                                                                               ]




>consensus_7518#1
TAACAACCATTTCCGATATCTAATATATCAGTTGGGACTAAGTGACCTCGTGGATCTGTA
AAAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGATAGTCAACT
GCTTGAATAGTGCATTTAGCATACAGATGGGTAAACATTTCATTTGGTAAACGAGCAGTA
CATAATGCAGGATAGGTTGTACTAACAACTAAACGACCAAAGCCAGAAAGACAACGAGCA
ATATCAGGAAGGCTAGCTTGATGAGGAGAAGACTGAAGAGTTGTCGTAGAAGACACATTC
GATCTTTGATGATGATTACGATGATGAAGTGAAGAGGATGGTGAGTCTGATTCATTATAA
TTTGTAACCGATGCTCCTGAGTAGTTTCCTGAAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7518#0      AAGCAACTTCAATAGGATCTGTACCGCTATTTGATTGAGGACGACCATGA-TAGTCAACT 59
consensus_7518#1      ---------TAACA--ACCATTTCCGATATCTAAT--ATATCAGTTGGGACTAAGTGACC 47
                                ** *  * *  * *** *** * **  *   *      ** **    ** 

consensus_7518#0      GCTTGAATAGTGCACTAAAAAGAGAAGAAAATGGGGTTTAAAATGAACAATGTATTCACT 119
consensus_7518#1      TCGTGGATC-TGTA----AAAGCAACTTCAATAGGATCTGTACCGC------TATTTGAT 96
                       * ** **  ** *    ****  *    *** ** * *  *  *       ****   *

consensus_7518#0      TTAAAACAGATCATAAAAAACGCCTCTCAGTGAAGTTGTTTACAAAAACTGAACTGCATG 179
consensus_7518#1      TGAGGAC-GACCATGATAGTCAACTGCTTGAATAGTGCATTTAGCATACAGATGGGTAAA 155
                      * *  ** ** *** * *  *  **    *   ***   **    * ** **   * *  

consensus_7518#0      CTTTGCTTATTCACAAATGTTAGGAGAGGTCAATATTTTTTGAGAGACAGTAG--ATGAA 237
consensus_7518#1      CATTTCAT-TTGGTAAACG--AGCAGTACATAATGCAGGATAGGTTGTACTAACAACTAA 212
                      * ** * * **   *** *  ** **     ***      *  *    * **   *  **

consensus_7518#0      ATTACCGTATTTAGTGATTCGAAAATATAATGTCGCTTGTGGTGTTTTTTTGTGAATAAA 297
consensus_7518#1      ACGACCAAAGCCAGAAAGACAACGA-GCAATATCAGGAAGGCTAGCTTGATGAGGAGAAG 271
                      *  ***  *   **  *  * *  *   *** **      * *   **  ** * * ** 

consensus_7518#0      TATTTTTGTTTATTGTGTGAAAAATGTACAACTACCTGAAATAATTTCTATACCCCAGAC 357
consensus_7518#1      ACTGAAGAGTTGTCGTAGAAGACACATTCGATCTTTGATGATGATTACGATGATGAAGTG 331
                        *      ** * **   * * *  * * *         ** *** * **     **  

consensus_7518#0      CACAGGATAGATGGAGTATTCATTTGGTAGTGTCTGCAAAAGAACATTTTGCCGTATTTC 417
consensus_7518#1      AAGAGGATGGT--GAGT-CTGATTCATTATAATTTGTAACCGATGCTCCTGAGTAGTTTC 388
                       * ***** *   ****  * ***   **   * ** **  **   *  **     ****

consensus_7518#0      ATACTAGCACGATTTCAAATGG 439
consensus_7518#1      CTGAAGAAA------------- 397
                       *      *