These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 841 fasta sequence [AGGATCAATTTCCAAATTANCAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTTTTCAACTCTAGTATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAATCTCATATGGCATATCACAACCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGACTATATCACGTCCCTCCGGTAATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCATCGGAAGGGTCACCGATCTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTATC] [-] EMBL CD194962 [AGGATCAATTTCCAAATTANCAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTTTTCAACTCTAGTATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAATCTCATATGGCATATCACAACCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGACTATATCACGTCCCTCCGGTAATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCATCGGAAGGGTCACCGATCTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTT ] [+] EMBL CD069791 [ CTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGG ] [+] EMBL CD069755 [ CTCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGG ] [-] EMBL CD069777 [ TCTTTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATAACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATTAAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCAGATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAAGTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAAGTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTATC] consensusID : consensus_7580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGTAACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCATCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTACAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTATAACTGACATCCCTAACACATCGAATACAAATCATGTCAGCATTGATAATCAACGTGTTCGTGATTGGTTACGTGACGCTGTTGCTACTACAACTAATGAAATGAAATCCACTGTTATTAATAACA] [-] EMBL CD153121 [ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGTAACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCATCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTACAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATTTCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATACAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCTGAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACTGATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTATAACTGACATCCCTAACACATCGAATACAAATCATGTCAGCATTGATAATCAACGTGTTCGTGATTGGTTACGTGACGCTGTTGCTACTACAACTAATGAAATGAAATCCACTGTTATTAATAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7580#0 ------------------------------------------------------------ consensus_7580#1 ACTGTCATTGCTACAACANCAGCTAATAATAATATTAATGAATTCATCATTGACAATAGT 60 consensus_7580#0 ------------------------------------------------------------ consensus_7580#1 AACACTAAGAAACCTGGTTGTTTATCTGATCGTCCTATCCGAAGACATAATATTCAATCA 120 consensus_7580#0 ----------------------------------------AGGATCAATTTCCAAATTAN 20 consensus_7580#1 TCACAACTTCAAGGATTAATAGAATTCCCTGCTCCATCTGAGGATCAATTTCCAAATTTA 180 ****************** consensus_7580#0 CAATTTANATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATT 80 consensus_7580#1 CAATTTAAATCAGTTTCTCATTCAGTTAATCCAAATCATAATAATTCTGTCAACTTGATT 240 ******* **************************************************** consensus_7580#0 TCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATA 140 consensus_7580#1 TCTGTTTATGGTAGTACATACCAAACTTCGTCATCATGCAGTACCTCCAATTATCCAATA 300 ************************************************************ consensus_7580#0 CAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCT 200 consensus_7580#1 CAATACGATCAAAATGTACCTTGTAAATTTATTGACAATATTATAACTACTGTATCTTCT 360 ************************************************************ consensus_7580#0 GAATCTACTACCAGTATTCAGAAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACT 260 consensus_7580#1 GAATCTACTACCAGTATTCAGGAAGAGTCTGATGTAAATAATTCTGATGAATCTATTACT 420 ********************* ************************************** consensus_7580#0 GATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTTTTCAACTCTAGT 320 consensus_7580#1 GATATACAACAAATCACCAACCTTAGTAGCGACAAGTCATTTCAGTTAT--AACTGACAT 478 *********************************************** * **** * consensus_7580#0 ATGTGCGAAGTTGTTAAACAATCCTCTATGCCTCCCACAATCTCATATGGCATATCACAA 380 consensus_7580#1 CCCTAACACATCGAATACAAATCATGTCAGCATTG-ATAATC----AACGTGT-TCGTGA 532 * * * * * **** * * ** * * **** * * * ** * consensus_7580#0 CCAGTCCCTCGCCAGCGTGCATTTCCTCGTACTAATCCGACTATATCACGTCCCTCCGGT 440 consensus_7580#1 TTGGTTACGTGACGCTGT-TGCTACTACA-ACTAATGAAATGAAATCCACTGTTATTAAT 590 ** * * * ** * * * ****** * * *** * * consensus_7580#0 AATGGGACTTGTACTCTACCTCGACCTTGTACTATCCCATCGGAAGGGTCACCGATCTCT 500 consensus_7580#1 AACA-------------------------------------------------------- 594 ** consensus_7580#0 TTGTTCCCTTCTGTCGCTCTTAGCCAGTTTAGTGATACCAGCTCTGCAAGAGCTTCAATA 560 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 ACCGACTCAAAAATTCCTATTATTCATGGATCAGACTCAAAAGACTCATCTTCCTTAATT 620 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 AAACAAAAATTGATTGAGCATGTATCAAGTAATCTGATACCTGAAGATATTTCTAATTCA 680 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 GATAACACACCTGAATGTATCATAACTTCTTCATCCCAAGTTTTAAATGCTTCTCTTAAA 740 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 GTTTCTTGTTCAGTCAATGAAGTCATACCTTCATACTGTTCTAATAAATATAATATCAAA 800 consensus_7580#1 ------------------------------------------------------------ consensus_7580#0 GTATCTTCTGGCAATTATCTTCCGGTTGATAGTCCTCTATC 841 consensus_7580#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||