cluster # 7608

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Schistosoma mansoni
cluster # 7608 cluster # 7608 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7608#0 length = 728 sequences # 4

consensus_7608#1 length = 348 sequences # 1

consensusID : consensus_7608#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 728
fasta sequence

                              [ACCAGGCCAANAATTTGGCACGAGGCACTCTCAGCCTACAAGTCAATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGAGATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCCACAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGT-GTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTTGAATGCTTACGATTAAATGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCATGTACTACTTGATCAACAACAAATCCCCAAAACACAAAGAGTTCAACAACCGCAATTCATTCTGTCAGCTAGCTCCGGCATAGTTTATGGATCAAA-TATAAATGCG-GCTGCAGCACGACTTGTTGGCACAGTGTTACCTAATACTCCC-CAACCTGGTAATCAACACTCACATCAAAGCAGTATGGATAGTGGAGTAGGTCAATCA-CTAACA-GGTCAATCAAATCCTAGTGCTAATCAGACTCCTGAGCATACTGTTATGCTATTTTGTGATCCAAGCATTGGCGCTTGTGGTGCAGACATATGGAAGGATCGCTTATCCGAATGAA]

[+] EMBL CD079653             [ACCAGGCCAANAATTTGGCACGAGGCACTCTCAGCCTACAAGTCAATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGAGATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCCACAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGT GTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTTGAATGCTTACGATTAAATGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCATGTACTACTTGATCAACAACAAATCCCCAAAACACAAAGAGTTCAACAACCGCAATTCATTCTGTCAGCTAGCTCCGGCATAGTTTATGGATCAAA TATAAATGCG GCTGCAGCACGACTTGTTGGCACAGTGTTACCTAATACTCCC CAACCTGGTAATCAACACTCACATCAAAGCAGTATGGATAGTGGAGTAGGTCAATCA CTAACA GGTCAATCAAATCCTAGTGCTAATCAGACTCCTGAGCATACTGTTATGCTATTTTGTGATCCAAGCATTGGCGCTTGTGGTGCAGACATATGGAAGGATCGCTTATCCGAATGAA]
[-] EMBL CD111106             [                                                                                                                                                                                 AGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGT GTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTTGAATGCTTACGATTATATGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCATGTACTACTTGATCAACAACAAATCCCCAAAACACAAAGAGTTCAACAACCGCAATTCATTCTGTCAGCTAGCTCCGGCATAGTTTATGGATCAAACTATAAATGCG TCTCCAGCACGACTTGTTGGCACAGTGTTACCTAATACTCCCACAACCTGGTAATCAACACTCACATCAAAGCAGTATGGATAGTGGAGTAGGTCAATCACCTAACACGGT                                                                                                                ]
[-] EMBL CD111063             [                                                                                                                                                                                 AGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGTAGTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTTGAATGCTTACGATTAAATGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCATGTACTACTTGATCAACAACTAATCCCCTAAACACAAAGAGTTCAACAACCGCAATTCATTCTGTCAGCTAGCTCCGGCATAGTTTATGGATCAAA TATAAATGCGTACCCCAGCACGAATTGTTGGCACAGTGTTACCTAATACTCCC CAACCTGGTAATCAACACTCACATCAAAGCAGTATGGATAGTGGAGTAGGTCAATCA CTAACA GGT                                                                                                                ]
[-] EMBL CD111049             [                                                                                                                                                                                 AGGAACTGTGGGTCACACTCAACTTCGGATTCCTGTTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGT GTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTTGAATGCTTACGATTAAATGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCATGTACTACTTGATCAACAACAAATCCCCAAAACACAAAGAGTTCAACAACCGCAATTCATTCTGTCAGCTAGCTCCGGCATAGTTTATGGATCAAA TATAAATGCG GCTGCAGCACGACTTGTTGGCACAGTGTTACCTAATACTCCC CAACCTGGTAATCAACACTCACATCAAAGCAGTATGGATAGTGGAGTAGGTCAATCACCTAACA GGT                                                                                                                ]




>consensus_7608#0
ACCAGGCCAANAATTTGGCACGAGGCACTCTCAGCCTACAAGTCAATCACTTGTAACGCA
TTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGAGATTGTGGTTCCAGTAC
AGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCCACAACAACAGTAACAGG
AACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAG
TTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGTGTGTTAC
CGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTTGAATGCTTACGATTAAA
TGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCATGTACTACTTGATCAACA
ACAAATCCCCAAAACACAAAGAGTTCAACAACCGCAATTCATTCTGTCAGCTAGCTCCGG
CATAGTTTATGGATCAAATATAAATGCGGCTGCAGCACGACTTGTTGGCACAGTGTTACC
TAATACTCCCCAACCTGGTAATCAACACTCACATCAAAGCAGTATGGATAGTGGAGTAGG
TCAATCACTAACAGGTCAATCAAATCCTAGTGCTAATCAGACTCCTGAGCATACTGTTAT
GCTATTTTGTGATCCAAGCATTGGCGCTTGTGGTGCAGACATATGGAAGGATCGCTTATC
CGAATGAA

consensusID : consensus_7608#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 348
fasta sequence

                              [TTGGACGACATCACAACGACACATTCACAAGTCTCCCCGTACAATCTCAGCCTACAAGTCAATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGAGATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCCACAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCGCTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGTGTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGG]

[+] EMBL CD166730             [TTGGACGACATCACAACGACACATTCACAAGTCTCCCCGTACAATCTCAGCCTACAAGTCAATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGAGATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCCACAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTGGCATTCTATCATCAAGTTCCTCGCTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTCAACAAGGGTGTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGG]




>consensus_7608#1
TTGGACGACATCACAACGACACATTCACAAGTCTCCCCGTACAATCTCAGCCTACAAGTC
AATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGAG
ATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCCA
CAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGTG
GCATTCTATCATCAAGTTCCTCGCTTACAGGTCTATGCGGCTCAAATGTAAATACTGGTC
AACAAGGGTGTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7608#0      -----------------ACCAGGCCAANAATTTGGCACGAGGCACTCTCAGCCTACAAGT 43
consensus_7608#1      TTGGACGACATCACAACGACACATTCACAAGTCTCCCCGTA-CAATCTCAGCCTACAAGT 59
                                         **     * ** *   * **   ** ***************

consensus_7608#0      CAATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGA 103
consensus_7608#1      CAATCACTTGTAACGCATTTTCGCTCTTGTAGTCAACCAGTTTCCATGTCCAGTGGTCGA 119
                      ************************************************************

consensus_7608#0      GATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCC 163
consensus_7608#1      GATTGTGGTTCCAGTACAGGCATAATACTAAGTTCAAACTCATCGGGTGTATCTACAGCC 179
                      ************************************************************

consensus_7608#0      ACAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGT 223
consensus_7608#1      ACAACAACAGTAACAGGAACTTTGGGTCACACTCAACTTCGGATTCCTGGTAGTTTAAGT 239
                      ************************************************************

consensus_7608#0      GGCATTCTATCATCAAGTTCCTCACTTACAGGTCTATGCGGCTCAAATGTAAATACTGGT 283
consensus_7608#1      GGCATTCTATCATCAAGTTCCTCGCTTACAGGTCTATGCGGCTCAAATGTAAATACTGGT 299
                      *********************** ************************************

consensus_7608#0      CAACAAGGGTGTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGGTCCAAGGACTT 343
consensus_7608#1      CAACAAGGGTGTGTTACCGGTTCCATTAGTACATCATCTGGACAATTGG----------- 348
                      *************************************************           

consensus_7608#0      GAATGCTTACGATTAAATGCATCAGTTACTTCTACAAATGCATTAAATAACTCCAATCAT 403
consensus_7608#1      ------------------------------------------------------------
                                                                                  

consensus_7608#0      GTACTACTTGATCAACAACAAATCCCCAAAACACAAAGAGTTCAACAACCGCAATTCATT 463
consensus_7608#1      ------------------------------------------------------------
                                                                                  

consensus_7608#0      CTGTCAGCTAGCTCCGGCATAGTTTATGGATCAAATATAAATGCGGCTGCAGCACGACTT 523
consensus_7608#1      ------------------------------------------------------------
                                                                                  

consensus_7608#0      GTTGGCACAGTGTTACCTAATACTCCCCAACCTGGTAATCAACACTCACATCAAAGCAGT 583
consensus_7608#1      ------------------------------------------------------------
                                                                                  

consensus_7608#0      ATGGATAGTGGAGTAGGTCAATCACTAACAGGTCAATCAAATCCTAGTGCTAATCAGACT 643
consensus_7608#1      ------------------------------------------------------------
                                                                                  

consensus_7608#0      CCTGAGCATACTGTTATGCTATTTTGTGATCCAAGCATTGGCGCTTGTGGTGCAGACATA 703
consensus_7608#1      ------------------------------------------------------------
                                                                                  

consensus_7608#0      TGGAAGGATCGCTTATCCGAATGAA 728
consensus_7608#1      -------------------------