These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 737 fasta sequence [TAATACTTTTATTCTTTATTTACATGACAATGAGAGGTAACTCTCTAAGTTCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGCCGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTGATCTGTTGGAATGGTTCTTTCTGTCTTTTCTGGTAATCTGATTGGTTCTTGATTGTTACCAAANAATTTGTCGAGTGTAAAAGCATCAATGGAGAGGGCTCCATATTGCATCACATGACTCTGGTTGGTCTTGGCCTTGACCTTCTCATATTGGTGGTCTATAGTTTCCCTCGNCAGNACAGCAACATCTGTGTCTTCCATCCAGTTTACACTGTATGTGTCCTCCAGGTAAGCATTTCTCTTACTGTCCCAATAACAGC] [+] EMBL CD139857 [TAATACTTTTATTCTTTATTTACATGACAATGAGAGGTAACTCTCTAAGTTCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTA ] [+] EMBL CD145040 [ TCTAAGTTCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGCCGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTGATCTGTTGGAATGGTTCTTTCTGTCTTTTCTGGTAATCTGATTGGTTCTTGATTGTTACCAAANAATTTGTCGAGTGTAAAAGCATCAATGGAGAGGGCTCCATATTGCATCACATGACTCTGGTTGGTCTTGGCCTTGACCTTCTCATATTGGTGGTCTATAGTTTCCCTCGNCAGNACAGCAACATCTGTGTCTTCCATCCAGTTTACACTGTATGTGTCCTCCAGGTAAGCATTTCTCTTACTGTCCCAATAACAGC] [-] EMBL CD138540 [ GTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAGGGAGGTACAGTTTACGCAAGGCCAGATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGAT ] [-] EMBL CD145769 [ GACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATTCTCTGGCACCTCGCTGTAAGCTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGACATGGTTTGTTTCAATTGACTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGCCGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTG ] consensusID : consensus_7650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [CTTCCGCGGGNATTCGATTGAGTAGACCTTGTCCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACTCTTGGCCAGATCATTATTGGTCAAGTGAATGTGGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTATCAGTCCC] [+] EMBL CD133128 [CTTCCGCGGGNATTCGATTGAGTAGACCTTGTCCTGGTCTAGAAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGACCTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACTCTTGGCCAGATCATTATTGGTCAAGTGAATGTGGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTCGTATCAGTCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7650#0 TAATACTTTTATTCTTTATTTACATGACAATGAGAGGTAACTCTCTAAGTTCTGGTCTAG 60 consensus_7650#1 ------------------CTTCCGCGGGNATTCGATTGAGTAGACCTTGTCCTGGTCTAG 42 ** * * ** ** * * ** ********* consensus_7650#0 AAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGAC 120 consensus_7650#1 AAGTTGTTACGCGCTACATAACGGGTTGACCCCTACAGCTGTTTCCAGGGCTGCGATGAC 102 ************************************************************ consensus_7650#0 CTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACGCAAGGCCAG 180 consensus_7650#1 CTTACTCTGTGGGTTGTGGTTACAGAGGTTGACAAGGAGGTACAGTTTACTCTTGGCCAG 162 ************************************************** * ****** consensus_7650#0 ATCATTATTGGTCAAGTGAATGTTGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTC 240 consensus_7650#1 ATCATTATTGGTCAAGTGAATGTGGGGACAAATGGAGACCAGAGTGTCCACGGCCATCTC 222 *********************** ************************************ consensus_7650#0 GTAGCAGTCCCACTCTTCAATCTCTTCGTGTTTCATCATGACTAGGGAGTAGAGGTGATT 300 consensus_7650#1 GTATCAGTCCC------------------------------------------------- 233 *** ******* consensus_7650#0 CTCTGGCACCTCGCTGTAAACTGTACTAACTATTTGATTGAACAGCTGATTGGTATGAGA 360 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 CATGGTTTGTTTCAATTGATTTAACTTTTCCTCCAAACGAGATCTTTCAAGGGAGTCAGC 420 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 CGCTGCAGCCAATCTGTTTTCAAGTGTCTTGAGGACAACTAGTTCGCTGGGCACTTGATC 480 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 TGTTGGAATGGTTCTTTCTGTCTTTTCTGGTAATCTGATTGGTTCTTGATTGTTACCAAA 540 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 NAATTTGTCGAGTGTAAAAGCATCAATGGAGAGGGCTCCATATTGCATCACATGACTCTG 600 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 GTTGGTCTTGGCCTTGACCTTCTCATATTGGTGGTCTATAGTTTCCCTCGNCAGNACAGC 660 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 AACATCTGTGTCTTCCATCCAGTTTACACTGTATGTGTCCTCCAGGTAAGCATTTCTCTT 720 consensus_7650#1 ------------------------------------------------------------ consensus_7650#0 ACTGTCCCAATAACAGC 737 consensus_7650#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||