cluster # 7693

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7693 cluster # 7693 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7693#0 length = 609 sequences # 3

consensus_7693#1 length = 381 sequences # 1
consensus_7693#2 length = 293 sequences # 1

consensusID : consensus_7693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 609
fasta sequence

                              [TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAGGGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACA]

[+] EMBL CD076139             [TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAGGGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACA]
[+] EMBL SMW766               [                      AATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAGGGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTGT  AGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAANTCGGCATTCCTTGAAAAANGTGCAGG                                                                                                                                                                                                            ]
[+] EMBL SM135                [                      AATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTCTAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATACAGCAAAGATTACAATAGTATATATGGATTCGACATGTATTGGATTGTGAAAAGGGAATTATTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGAT                                                                                                                                                                                                                                                                                                                                                                                   ]




>consensus_7693#0
TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTC
TAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATAC
AGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTA
TTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAG
GGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTG
TAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACT
GATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAAC
GCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGT
TGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATCAATAAACTAAC
AACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAG
GTTAAAACA

consensusID : consensus_7693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [GCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATTCTATAATATAATGCATCATTATGTGGACCATTTAGGAATGTTGGTGGACCGTATTGCCAATTTTGACAACGTTTCTTATTACGATAAATTTGTAAAGGGAATCCGGTCAAACCATCAATTTT]

[-] EMBL CD133705             [GCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAGCAACAGAAATAGGATTATTCTATAATATAATGCATCATTATGTGGACCATTTAGGAATGTTGGTGGACCGTATTGCCAATTTTGACAACGTTTCTTATTACGATAAATTTGTAAAGGGAATCCGGTCAAACCATCAATTTT]




>consensus_7693#1
GCTGTTGACACGGATAATTGAGTTGACGTGTAGAGTTTCCAAGTAGAAATTAAATTAGGA
GACTTTAATAGTGGATCAAACGATTGAACTGATGGTGGGTCATTAAAATTCGGCATTCCT
TGAAATATGTGCAGGTTATTTATTATCAACGCAATAATAATAATTATGATTGCTTTTTAA
TAAGTTTGTGTCGTACATTTGTAGATCAGTTGGATTATTTTTAAGTTCTGCATGTAGCAG
CAACAGAAATAGGATTATTCTATAATATAATGCATCATTATGTGGACCATTTAGGAATGT
TGGTGGACCGTATTGCCAATTTTGACAACGTTTCTTATTACGATAAATTTGTAAAGGGAA
TCCGGTCAAACCATCAATTTT

consensusID : consensus_7693#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TTAGAAATAAGATACTGTGAAACACTTACCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACAGCCCTTAGTAAAAAGAAAAATGAACATATTGTTATGGCTTAGGATTTTTGTATTTGAAGAACTGTATTTCAGCAGTTAAAATGCAAGGAGATGTCTTTTGATTGGTGATTTCTTATGACAAGGATTGTGGGGGAGTGAGGACTACTCACGAAACCATGTTATTGATGCAAGTCGCCCGGATAA]

[+] EMBL CD163828             [TTAGAAATAAGATACTGTGAAACACTTACCAATAAACTAACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACAGCCCTTAGTAAAAAGAAAAATGAACATATTGTTATGGCTTAGGATTTTTGTATTTGAAGAACTGTATTTCAGCAGTTAAAATGCAAGGAGATGTCTTTTGATTGGTGATTTCTTATGACAAGGATTGTGGGGGAGTGAGGACTACTCACGAAACCATGTTATTGATGCAAGTCGCCCGGATAA]




>consensus_7693#2
TTAGAAATAAGATACTGTGAAACACTTACCAATAAACTAACAACTGTCAATCCCATTCCG
AGCATATATTCAGCGTATGCATCAATATAATCGACAAGTAGGTTAAAACAGCCCTTAGTA
AAAAGAAAAATGAACATATTGTTATGGCTTAGGATTTTTGTATTTGAAGAACTGTATTTC
AGCAGTTAAAATGCAAGGAGATGTCTTTTGATTGGTGATTTCTTATGACAAGGATTGTGG
GGGAGTGAGGACTACTCACGAAACCATGTTATTGATGCAAGTCGCCCGGATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7693#0      TAAGCTTGTATTTATTGTAATCAATTGTTTTTATTCCGAAAAGACGGTTAAGCTTTTTTC 60
consensus_7693#1      ------------------------------------------------------------
consensus_7693#2      ------------------------------------------------------------
                                                                                  

consensus_7693#0      TAATGTATTGTCAAAGTCATACAAGAAAACTGTAGTTTATACAGGTTAGAAAGTATATAC 120
consensus_7693#1      ------------------------------------------------------------
consensus_7693#2      ------------------------------------------------------------
                                                                                  

consensus_7693#0      AGCAAAGATTACAATAGTATATATGCATTCGACATGTATTGGATTGTGAAAAGGGAATTA 180
consensus_7693#1      ------------------------------------------------------------
consensus_7693#2      ------------------------------------------------------------
                                                                                  

consensus_7693#0      TTTTGGATAAAACTTGACGGCCATGTGGTGTAAATGTTAGTCACGTTTATTTTATGATAG 240
consensus_7693#1      ------------------------------------------------------------
consensus_7693#2      ------------------------------------------------------------
                                                                                  

consensus_7693#0      GGTTGGCGACCAAATCCTGACAGTACAGTTGCTGTTGACACGGATAATTGAGTTGACGTG 300
consensus_7693#1      ------------------------------GCTGTTGACACGGATAATTGAGTTGACGTG 30
consensus_7693#2      ------------------------------------------------------------
                                                                                  

consensus_7693#0      TAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACT 360
consensus_7693#1      TAGAGTTTCCAAGTAGAAATTAAATTAGGAGACTTTAATAGTGGATCAAACGATTGAACT 90
consensus_7693#2      ------------------TTAGAAATAAGATACTGTGAAACA----CTTACCAATAAACT 38
                                         *  ** ** ** *** * * *      *  ** * * ****

consensus_7693#0      GATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAAC 420
consensus_7693#1      GATGGTGGGTCATTAAAATTCGGCATTCCTTGAAATATGTGCAGGTTATTTATTATCAAC 150
consensus_7693#2      AACAACTGTCAATCCCATTCCGAGCATATATTCAGCGTATGCA---TCAATATAATCGAC 95
                       *     *   **   * * **    *   *  *   * ****   *   *** *** **

consensus_7693#0      GCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGT 480
consensus_7693#1      GCAATAATAATAATTATGATTGCTTTTTAATAAGTTTGTGTCGTACATTTGTAGATCAGT 210
consensus_7693#2      AAGTAGGTTAAAACAGCCCTTAGTAAAAAGAAAAATGA--ACATATTGTTATGGCTTAGG 153
                             * * **      **  *    *  **  *     * **   ** * * * ** 

consensus_7693#0      TGGATTATTTTT-AAGTTCTGCATGT-AGCAGCAACAGAAATAGGATTAT-CAATAAACT 537
consensus_7693#1      TGGATTATTTTT-AAGTTCTGCATGT-AGCAGCAACAGAAATAGGATTATTCTATAATAT 268
consensus_7693#2      ATTTTTGTATTTGAAGAACTGTATTTCAGCAGTTAAAATGCAAGGAGATGTCTTTTGATT 213
                          ** * *** ***  *** ** * *****  * *     ****     *  *    *

consensus_7693#0      AACA----ACTGTCAATCCCATT-CCG-AGCATATATTCAGCGTATGCATCAATATAATC 591
consensus_7693#1      AATGCATCATTATGTGGACCATT-TAGGAATGTTGGTGGACCGTAT-TGCCAATTTTGAC 326
consensus_7693#2      GGTGATTTCTTATGACAAGGATTGTGGGGGAGTGAGGACTACTCACGAAACCATGTTATT 273
                                * *       ***   *     *        *  *     * ** *    

consensus_7693#0      GACAAGTAG-GTTAAAACA------------------------------------ 609
consensus_7693#1      AACGTTTCTTATTACGATAAATTTGTAAAGGGAATCCGGTCAAACCATCAATTTT 381
consensus_7693#2      GATGCAAGTCGCCCGGATAA----------------------------------- 293
                       *              * *