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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1169 fasta sequence
[AGACATTTTCTTAAAGGTATGGACCAAGGATCACGGCGTCTGAGAGAAGACACTGCAGTTTGTGAGTTTGATTGGATTTGTAGAAGTGGTGGATTTAGACAAAGGTCACCAATCAATGCTGAGTGTTGTGGTAACTGACGTAATTGAACCACATCCTGCTCCTTTAAATTAACCATGTCTCTGTAGTTGTTCAATTTTGCAGGGTAGTTTTGAGCAGCATATGCTGATGCGGCCAAGATAGCTGCTGCAGCGGACGCTCCCATTAATCTTTGACGAGCGCTAATCGAAGGGTCATCTGGGATATGAGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTAACTGAGGTAAGTGGTCGGGTATCACAAATAGGCTGACTAAGTTGACCATATGAAGATGATGTTGAAGCTTGTAAGGGTGGACTATTAACAGGATTAGTACTAGCACTATTTCTTGTACTAGATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAAGACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGACAATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTTTGGTTTACGTCACAAGCTTCATCCTCAGAGAACCATCTGCGACTAGATAGGTTATCATCGTCGACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAACATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTACTGACTGATTACGTAAGTTAGGAGAAAATAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAGAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCCTGTGCAAAAG]
[-] EMBL CD125760 [AGACATTTTCTTAAAGGTATGGACCAAGGATCACGGCGTCTGAGAGAAGACACTGCAGTTTGTGAGTTTGATTGGATTTGTAGAAGTGGTGGATTTAGACAAAGGTCACCAATCAATGCTGAGTGTTGTGGTAACTGACGTAATTGAACCACATCCTGCTCCTTTAAATTAACCATGTCTCTGTAGTTGTTCAATTTTGCAGGGTAGTTTTGAGCAGCATATGCTGATGCGGCCAAGATAGCTGCTGCAGCGGACGCTCCCATTAATCTTTGACGAGCGCTAATCGAAGGGTCATCTGGGATATGAGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTAACTG ]
[-] EMBL CD197748 [ AGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTAACTGAGGTAAGTGGTCGGGTATCACAAATAGGCTGACTAAGTTGACCATATGAAGATGATGTTGAAGCTTGTAAGGGTGGACTATTAACAGGATTAGTACTAGCACTATTTCTTGTACTAGATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAAGACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGACAATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTTTGGTTTAC ]
[+] EMBL CD129497 [ GCACTATTTCTTGTACTAGATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAAGACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGACAATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTTTGGTTTACGTCACAAGCTTCATCCTCAGAGAACCATCTGCGACTAGATAGGTTATCATCGTCGACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAACATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTACTGACTGATTACGTAAGTTAGGAGAAAATAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAA ]
[-] EMBL CD114312 [ ttttgcACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAACATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAGTTAGGAGAAAATAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAGAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCCTGTGCAAAAG]
consensusID : consensus_7715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[GTACTCTAGAAGCACCCCCGTGAAACCTCGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAGTTAGGAAAAAAATAGTATTTGTCCTCTAAAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAAAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCTGTGGAAGTGACCGGATTTGATCATTTGACCCTAGGATGGAAAGTTGACTTTGAACCTCATCCATGGAGTCATTAATATTAG]
[+] EMBL CD059664 [GTACTCTAGAAGCACCCCCGTGAAACCTCGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAGTTAGGAAAAAAATAGTATTTGTCCTCTAAAAAGTGGAGGAGGTGGAGAAGGTCGGTAACGTGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAATGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGGTTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCATACATTGTAAAGTCAAATCGCTCATGTGACTTCCAAAATCAACCAGTTTCTTAATGACATCACGTTGCTCTTTTTCTTCCTGTGGAAGTGACCGGATTTGATCATTTGACCCTAGGATGGAAAGTTGACTTTGAACCTCATCCATGGAGTCATTAATATTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7715#0 AGACATTTTCTTAAAGGTATGGACCAAGGATCACGGCGTCTGAGAGAAGACACTGCAGTT 60
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 TGTGAGTTTGATTGGATTTGTAGAAGTGGTGGATTTAGACAAAGGTCACCAATCAATGCT 120
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 GAGTGTTGTGGTAACTGACGTAATTGAACCACATCCTGCTCCTTTAAATTAACCATGTCT 180
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 CTGTAGTTGTTCAATTTTGCAGGGTAGTTTTGAGCAGCATATGCTGATGCGGCCAAGATA 240
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 GCTGCTGCAGCGGACGCTCCCATTAATCTTTGACGAGCGCTAATCGAAGGGTCATCTGGG 300
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 ATATGAGAGGAGAGGGTTATTTTGGAACAAGAAGAAATTACTGGGTCTGAATTATAAGTA 360
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 ACTGAGGTAAGTGGTCGGGTATCACAAATAGGCTGACTAAGTTGACCATATGAAGATGAT 420
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 GTTGAAGCTTGTAAGGGTGGACTATTAACAGGATTAGTACTAGCACTATTTCTTGTACTA 480
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 GATGAAGTAGTAAGTCGAAGTGAAACCTGGTCATCTGCAGCTACTCTGGATAAAGCTGAA 540
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 GACAAAGAAAGCGATGAAGAAGTTATAACACCCGTGTCCAACGTGAGTGCAATAGGGGAC 600
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 AATGTTGTAGACAAACCAACAAAAGGAGAAGGTTCCTCCATAACACGGTGGTATAAAGTT 660
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 TGGTTTACGTCACAAGCTTCATCCTCAGAGAACCATCTGCGACTAGATAGGTTATCATCG 720
consensus_7715#1 ------------------------------------------------------------
consensus_7715#0 TCGACAGTTTCTAAATCACTCGTCTGAAGTTGAGAATACCCTTTGATCTGTAGTGGAAAA 780
consensus_7715#1 -------------------------------------------------GTACTCTAGAA 11
*** * * **
consensus_7715#0 CATTCCGAATTTATAAACCTTGACGGTTGCTCTGAAACTTCTACTGACTGATTACGTAAG 840
consensus_7715#1 GCACCCCCGT---GAAACCTCGACGGTTGCTCTGAAACTTCTAATGACTGATTACGTAAG 68
** * ****** ********************** ****************
consensus_7715#0 TTAGGAGAAAA-TAGTATTTGTCCTCTAGAAAGTGGAGGAGGTGGAGAAGGTCGGTAACG 899
consensus_7715#1 TTAGGAAAAAAATAGTATTTGTCCTCTAAAAAGTGGAGGAGGTGGAGAAGGTCGGTAACG 128
****** **** **************** *******************************
consensus_7715#0 TGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAA 959
consensus_7715#1 TGCAAAAAGAGGAATGAACTCTTCTTTGACAGCTCTACCATCGACTGAAGTAAGGGAAAA 188
************************************************************
consensus_7715#0 TGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGG 1019
consensus_7715#1 TGTTCCAATATCGTAATCTCCCGATTCACAATCACCTGGACTACCCTCGAATCTCACAGG 248
************************************************************
consensus_7715#0 TTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCAT 1079
consensus_7715#1 TTCTTGATTGAACTCTCTTGCTAACAAGGCATCGTCATCATCATCGTAATAATTATCCAT 308
************************************************************
consensus_7715#0 ACATTGTAAAGTCAAATCGCTCATGTGACTTCCAGAATCAACCAGTTTCTTAATGACATC 1139
consensus_7715#1 ACATTGTAAAGTCAAATCGCTCATGTGACTTCCAAAATCAACCAGTTTCTTAATGACATC 368
********************************** *************************
consensus_7715#0 ACGTTGCTCTTTTTCTTCCCTGTGCAAAAG------------------------------ 1169
consensus_7715#1 ACGTTGCTCTTTTTCTTCC-TGTGGAAGTGACCGGATTTGATCATTTGACCCTAGGATGG 427
******************* **** ** *
consensus_7715#0 ------------------------------------------
consensus_7715#1 AAAGTTGACTTTGAACCTCATCCATGGAGTCATTAATATTAG 469
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||