cluster # 7719

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Schistosoma mansoni
cluster # 7719 cluster # 7719 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7719#0 length = 543 sequences # 1

consensus_7719#1 length = 533 sequences # 4

consensusID : consensus_7719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence

                              [TTCGGCACGAGGAAACTTTCATCGTTCTCATCAGTGCCTATATTTCATATGTAACTGAAGCTTTCAAAAATCATTCTGCAAGTACTAAATCAATTCATCTTATTAAATTTAGTTATCACTTCTTTATGACAAACCATTGGATGATCAATCATTGAGTTCATCTTTTTTCTAGGTTAACATCTACATTATTTATACCTCACAGTTACATACATACATATATAATGCACACAATGACTGTAGCGCATCCATATACAAACGATGTTCAGTTCTATTCTCTTAAATTTTCCCAATCTACATTTTTCAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGTTGATAATGATGGCAATCCACTAGGTACACGAATACTTGTCCCAATACCAGCGCGATTAAGAAGTTTATCAGGAGATATAACGAAAATTTTGTCAATAGCTAGTTCATTTGTATGAGAAAAATAA]

[+] EMBL CD084171             [TTCGGCACGAGGAAACTTTCATCGTTCTCATCAGTGCCTATATTTCATATGTAACTGAAGCTTTCAAAAATCATTCTGCAAGTACTAAATCAATTCATCTTATTAAATTTAGTTATCACTTCTTTATGACAAACCATTGGATGATCAATCATTGAGTTCATCTTTTTTCTAGGTTAACATCTACATTATTTATACCTCACAGTTACATACATACATATATAATGCACACAATGACTGTAGCGCATCCATATACAAACGATGTTCAGTTCTATTCTCTTAAATTTTCCCAATCTACATTTTTCAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGTTGATAATGATGGCAATCCACTAGGTACACGAATACTTGTCCCAATACCAGCGCGATTAAGAAGTTTATCAGGAGATATAACGAAAATTTTGTCAATAGCTAGTTCATTTGTATGAGAAAAATAA]




>consensus_7719#0
TTCGGCACGAGGAAACTTTCATCGTTCTCATCAGTGCCTATATTTCATATGTAACTGAAG
CTTTCAAAAATCATTCTGCAAGTACTAAATCAATTCATCTTATTAAATTTAGTTATCACT
TCTTTATGACAAACCATTGGATGATCAATCATTGAGTTCATCTTTTTTCTAGGTTAACAT
CTACATTATTTATACCTCACAGTTACATACATACATATATAATGCACACAATGACTGTAG
CGCATCCATATACAAACGATGTTCAGTTCTATTCTCTTAAATTTTCCCAATCTACATTTT
TCAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGT
GCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGTT
GATAATGATGGCAATCCACTAGGTACACGAATACTTGTCCCAATACCAGCGCGATTAAGA
AGTTTATCAGGAGATATAACGAAAATTTTGTCAATAGCTAGTTCATTTGTATGAGAAAAA
TAA

consensusID : consensus_7719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 533
fasta sequence

                              [CATAACAGTTTCCTTTCCAAAGAAGGAAGTTTGTATCAACGTGGAAGGAATATATGGACATCAATTAATGAAGGTCATGGATCACTGTATTTTATTGCTCCACAAACACGTCTACGTGTAGTTGACAATAGTCCATGGAGTAGTATTGCTCCCGCAACTCATATAAACACTGGTAAAGATCAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAGATATGAAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGGCAAAATGTATCCGTGTTTATAATAAACGAAATAAAGGAACTATAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTG-C-GATAATGATGGCAATCCACTA-GTA-ACGAATACTTGTCCCATACCAGCGCGATTAAGAAGTTATCAGCGAGAATACCGA]

[+] EMBL CD153450             [CATAACAGTTTCCTTTCCAAAGAAGGAAGTTTGTATCAACGTGGAAGGAATATATGGACATCAATTAATGAAGGTCATGGATCACTGTATTTTATTGCTCCACAAACACGTCTACGTATAGTTGACAATAGTCCATGGAGTAGTATTGCTCCCGCAACTCATATAAACACTGGTAAAGATCAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAGATATGAAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGGCAAAATGTATCCGTGTTTATAATACACGACATAAAGGAACTATAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGTCACGTTTTGACTCACACACTATTGTGCTTG CTGATACTGATGGCCATCCACTATGTACACGAATACTTGTCCCATACCAGCGCGATTAAGAAGTTATCAGCGAGAATACCGA]
[-] EMBL CD134250             [                                                                tgtactagGGTCATGGATCACTGTATTTTATTGCTCCACAAACACGTCTACGTGTAGTTGACAATAGTCCATGGAGTAGCATTGCTCCCGCAACTCATATAAACACTGGTAAAGATCAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAGATATGAAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGGCAAAATGTATCCGTGTTTATAATAAACGAAATAAAGGAACTATAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGTT GATAATGATGGCAATCCACTA GTA ACG                                                   ]
[-] EMBL CD134232             [                                                                                  CACTGTATTTTATTGCTCCACAAACACGTCTACGTGTAGTTGACAATAGTCCATGGAGTAGTATTGCTCCCGCAACTCATATAAACACTGGTAAAGATCAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAGATATGAAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGGCAAAATGTATCCGTGTTTATAATAAACGAAATAAAGGAACTATAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGTT GATAATGATGGCAATCCACTA GTA ACG                                                   ]
[-] EMBL CD134313             [                                                                                  CACTGTATTTTATTGCTCCACAAACACGTCTACGTGTAGTTGACAATAGTCCATGGAGTAGTATTGCTCCCGCAACTCATATAAACACTGGTAAAGATCAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAGATATGAAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGGCAAAATGTATCCGTGTTTATAATAAACGGAATAAAGGAACTATAGGTGATAAAGTATTGGTTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTG C CCCAATGAT                                                                       ]




>consensus_7719#1
CATAACAGTTTCCTTTCCAAAGAAGGAAGTTTGTATCAACGTGGAAGGAATATATGGACA
TCAATTAATGAAGGTCATGGATCACTGTATTTTATTGCTCCACAAACACGTCTACGTGTA
GTTGACAATAGTCCATGGAGTAGTATTGCTCCCGCAACTCATATAAACACTGGTAAAGAT
CAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAGATATG
AAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGGCAAAA
TGTATCCGTGTTTATAATAAACGAAATAAAGGAACTATAGGTGATAAAGTATTGGTTGCT
GTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTAATGGT
TGGCCACGTTTTGACTCAAACAATATTGTGCTTGCGATAATGATGGCAATCCACTAGTAA
CGAATACTTGTCCCATACCAGCGCGATTAAGAAGTTATCAGCGAGAATACCGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7719#0      --------------TTCGGCACGAGGAAACTTTCATCGTTCTCATCAGTGCCTATATTTC 46
consensus_7719#1      CATAACAGTTTCCTTTCCAAAGAAGGAAGTTTGTATCAACGTGGAAGGAATATATGGA-C 59
                                    ***   *  *****  **  ***    *     *    ***    *

consensus_7719#0      ATATGTAACTGAAGCTTTCAAAAATCATTCTGCAAGTACTAAATCAATTCATCTTATTAA 106
consensus_7719#1      ATCAATTAATGAAGGTCATGGATCACTGTATTTTATTGCTCCACAAACACGTCT----AC 115
                      **   * * ***** *     *   *  * *   * * **  *  **  * ***    * 

consensus_7719#0      ATTTAGTTATCACTTCTTTATGACAAACCATTGGATGATCAA-TCAT-TGAGTTC----- 159
consensus_7719#1      GTGTAGTTGACAATAGTCCATGGAGTAGTATTGCTCCCGCAACTCATATAAACACTGGTA 175
                       * *****  ** *  *  ***    *  ****      *** **** * *   *     

consensus_7719#0      ---ATCTTTTTTCTAGGTTAACATCTA-CATTATTTATA---CCTCACAGTTACATACAT 212
consensus_7719#1      AAGATCAGTCAGTCAAGAAAGTTTCTAACACTGATCAAAAACTATCAAAACCGATTACAG 235
                         ***  *     * *  *   **** ** *  * * *     *** *      **** 

consensus_7719#0      ACATATATAATGCACACAAT--GACTGTAGCGCATCCATATACA--AACGAT------GT 262
consensus_7719#1      ATATGAAAGATGTGTCCAATTTAATTTCATTAGGTTCAAAAGCACTATCAATTAAACCGG 295
                      * **  *  ***    ****   * *  *     * ** *  **  * * **      * 

consensus_7719#0      TCAGTTCTATTC---TCTTAAATTTTCCCAATCTACATTTTTCAGGTGATAAAGTATTGG 319
consensus_7719#1      CAAAATGTATCCGTGTTTATAATAAACGAAATAAAGGAACTATAGGTGATAAAGTATTGG 355
                        *  * *** *   * *  ***   *  ***  *     *  *****************

consensus_7719#0      TTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTA 379
consensus_7719#1      TTGCTGTTAATGGAGAAATGAAAAGAGGTTGGATTGTTGGTGCACGGCTACCATCTGTTA 415
                      ************************************************************

consensus_7719#0      ATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGTTGATAATGATGGCAATCCAC 439
consensus_7719#1      ATGGTTGGCCACGTTTTGACTCAAACAATATTGTGCTTGC-GATAATGATGGCAATCCAC 474
                      ***************************************  *******************

consensus_7719#0      TAGGTACACGAATACTTGTCCCAATACCAGCGCGATTAAGAAGTTTATCAGGAGATATAA 499
consensus_7719#1      TAG-TA-ACGAATACTTGTCCCA-TACCAGCGCGATTAAGAAGTT-ATCAGCGAGAATAC 530
                      *** ** **************** ********************* *****     *** 

consensus_7719#0      CGAAAATTTTGTCAATAGCTAGTTCATTTGTATGAGAAAAATAA 543
consensus_7719#1      CGA----------------------------------------- 533
                      ***