cluster # 773

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Schistosoma mansoni
cluster # 773 cluster # 773 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_773#0 length = 487 sequences # 1

consensus_773#1 length = 235 sequences # 1

consensusID : consensus_773#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATACTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTTATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAATAAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAACAATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGGAATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTTATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTTACCATGC]

[+] EMBL CD069145             [ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATACTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTTATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAATAAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAACAATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGGAATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTTATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTTACCATGC]




>consensus_773#0
ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATA
CTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTT
ATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAAT
AAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAAC
AATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGG
AATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCA
GAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTT
ATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTT
ACCATGC

consensusID : consensus_773#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [TTGTGTAGTCGTAGTAGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACCACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTG]

[+] EMBL CD181171             [TTGTGTAGTCGTAGTAGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGCGTGTGGGTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAATCAACCGGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACCACTGAGAGATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTG]




>consensus_773#1
TTGTGTAGTCGTAGTAGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGC
GTGTGGGTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTA
ATCAACCGGGAACTGAACTTGTTGTGGAATGGAGCGATAGACGGTGACCACTGAGAGATC
AGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACTGAGGGAAGTATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_773#0      ATATCTAAAGAATAACTTAGTGTCTTTAGTAAATAATTTTCATAAATTATATTTTCAATA 60
consensus_773#1      -----------------------------------------------------TTGTGTA 7
                                                                          **   **

consensus_773#0      CTTTTTGTTCACGGAAATTATGCAAGACACTATTTCTCTAGAATTCAATGGAAACATGTT 120
consensus_773#1      GTCGTAGT--AGTCACATTGTGCTAGTAAAGAGGTGCGTGACCGAGCAAGCAAGCGTGTG 65
                      *  * **  *   * *** *** **  *  *  *   *        * * ** * *** 

consensus_773#0      ATACTTGAGTGGAATTCATTGCAAAAAATTAAATGAATGTCCGTCAATGTTTAAAAGAAT 180
consensus_773#1      G---GTGAATGAATCGTGTTGGTGAGTGCCGGATGGCGATGGGATGAGGAGTTGAGTAAT 122
                          *** ** *     ***   *       ***    *  *   * *  *  *  ***

consensus_773#0      AAATTGACAAAAATTGAACCGCAAGTATACATAAGCAAATTTGTAAAAATTATATTTAAC 240
consensus_773#1      CAACCG---GGAACTGAACTTGTTGTGGA-ATGGAGCGATAGACGGTGACCAC-TGAGAG 177
                      **  *     ** *****     **  * **      **        *  *  *   * 

consensus_773#0      AATAATCTCAGAAACTAAAATATGGCATGGTAAGCAAAGATGGCTAGTGACTAGTAGTGG 300
consensus_773#1      ATCAGACACGAAGCAGTGAATAAAACACTGGAGGAAGGAATGACT-GAGGGAAGTATTG- 235
                     *  *  * *  *      ****   **  * * * *   *** ** * *   **** ** 

consensus_773#0      AATCCAGGACGCGCGTTTCGTCCTATTTAGGACTAGTCAGCTGAATGTACCTGCATCTCA 360
consensus_773#1      ------------------------------------------------------------
                                                                                 

consensus_773#0      GAGTTGATGTTCACTCTGGGACTCGAACCTAGTACCTTTCGCTTCAAACGCAATCGCGTT 420
consensus_773#1      ------------------------------------------------------------
                                                                                 

consensus_773#0      ATCCACTCGGCCACTGAGTCCTGATAGCGACTTGCTGCTAGCCACTACCCGTCTTTGCTT 480
consensus_773#1      ------------------------------------------------------------
                                                                                 

consensus_773#0      ACCATGC 487
consensus_773#1      -------