These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence [GTCAAGGTAGTGCAAAAGCTAAATATAAAACTCGATTAAAACAACTTGTTCATTGGTGTGGGAAAAAGTTTGATGGTGTGATTGTGTTTGACGAATGTCATCGAGCTAAAAATNTAACTCCTAGTGGTTCTCAAAAACCTACAAAAACAGGTCTAACTGTGCTTGAATTACAGAACAAACTACCAAATGCTCGGATTGTTTATGCTAGTGCAACAGGTGCCACTGAGCCTCGTAACATGGCTTATATGACGCGTCTAGGATTGTGGGGAGATGGGACACCATTTAAAACCTTTAATTCATTCATCCAAACACTTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGAAACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTAATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATCAGTCAACTGACCTGTGGGTATATGCATATCGCTTCTTCTCAGAAGCATCACGTTTATTAGATCTAAGTGACCGTTATCGTAAAACTATGTGGGGACAATTTTGGTCTGCTCATCAACGATTTTTTAAATATCTTTGCATTGCTGCCAAAGTGGAAACATGTGTTGAAATTGCTAAAACTGCTGTTGATGAGGGTAAATGTGTTGTCATTGGTCTTCAGTCTACTGGTGAAGCTAAAACTCTAGAACAAGTTGAAGA] [-] EMBL CD125715 [GTCAAGGTAGTGCAAAAGCTAAATATAAAACTCGATTAAAACAACTTGTTCATTGGTGTGGGAAAAAGTTTGATGGTGTGATTGTGTTTGACGAATGTCATCGAGCTAAAAATNTAACTCCTAGTGGTTCTCAAAAACCTACAAAAACAGGTCTAACTGTGCTTGAATTACAGAACAAACTACCAAATGCTCGGATTGTTTATGCTAGTGCAACAGGTGCCACTGAGCCTCGTAACATGGCTTATATGACGCGTCTAGGATTGTGGGGAGATGGGACACCATTTAAAACCTTTAATTCATTCATCCAAACACTTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACA ] [+] EMBL CD064922 [ AAAGCTAAATATAAAACTCGATTAAAACAACTTGTTCATTGGTGTGGGAAAAAGTTTGATGGTGTGATTGTGTTTGACGAATGTCATCGAGCTAAAAATTTAACTCCTAGTGGTTCTCAAAAACCTACAAAAACAGGTCTAACTGTGCTTGAATTACAGAACAAACTACCAAATGCTCGGATTGTTTATGCTAGTGCAACAGGTGCCACTGAGCCTCGTAACATGGCTTATATGACGCGTCTAGGATTGTGGGGAGATGGGACACCATTTAAAACCTTTAATTCATTCATCCAAACACTTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGAAACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTAATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATCAGTCAACTGACCTGTGGGTATATGCATATCGCTTCTTCTCAGAAGCATCACGTTTATTAGATCTAAGTGACCGTTATCGTAAAACTATGTGGGGACAATTTTGGTCTGCTCATCAACGATTTTTTAAATATCTTTGCATTGCTGCCAAAGTG ] [+] EMBL CD112171 [ GACACCATTTAAAACCTTTAATTCATTCATCCAAACACTTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGAAACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTAATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATCAGTCAACTGACCTGTGGGTATATGCATATCGCTTCTTCTCAGAAGCATCACGTTTATTAGATCTAAGTGACCGTTATCGTAAAACTATGTGGGGACAATTTTGGTCTGCTCATCAACGATTTTTTAAATATCTTTGCATTGCTGCCAAAGTGGAAACATGTGTTGAAATTGCTAAAACTGCTGTTGATGAGGGTAAATGTGTTGTCATTGGTCTTCAGTCTACTGGTGAAGCTAAAACTCTAGAACAAGTTGAAGA] consensusID : consensus_7760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 526 fasta sequence [TTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGAAACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTAATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATCAGTCAACTGACCTGGTTAGTGTTCCTTCATTTTTCTCTTTTATCTCAACACGATCAGTATACTCCGATGGTTAATACGTAGTTTGTTTAACAAATAATTATTAATATTCTCTGACATATGGCATGCATTAATCACTATAGGTGTTATGTTCAGTATATTTTTTAGAAGCACGTGGAACTAACCACTTTAAGCAGAAACCACGAAAGTGAGACACTTTTGTTTATCCGTCAAGTATATCTCTAAACATCGTAGTAGCTCACGAATTAGAGTACAAATTTTCTCTAAATGATCTAACTCAAAGTTCAATTTAAGTCGATACCTTCAATTGACCGAGTTAATTGTAGTAAGCGGCATTCAT] [+] EMBL CD157423 [TTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGAAACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTAATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATCAGTCAACTGACCTGGTTAGTGTTCCTTCATTTTTCTCTTTTATCTCAACACGATCAGTATACTCCGATGGTTAATACGTAGTTTGTTTAACAAATAATTATTAATATTCTCTGACATATGGCATGCATTAATCACTATAGGTGTTATGTTCAGTATATTT ] [-] EMBL CD157413 [ TTTCATGGTG GAATTTCAGCATTAATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTGTCCAAGTCTATAATCAGTCAACTGACCTGGTTAGTGTTCCTTCATTTTTCTCTTTTATCTCAACACGATCAGTATACTCCGATGGTTAATACGTAGTTTGTTTAACAAATAATTATTAATATTCTCTGACATATGGCATGCATTAATCACTATAGGTGTTATGTTCAGTATATTTTTTAGAAGCACGTGGAACTAACCACTTTAAGCAGAAACCACGAAAGTGAGACACTTTTGTTTATCCGTCAAGTATATCTCTAAACATCGTAGTAGCTCACGAATTAGAGTACAAATTTTCTCTAAATGATCTAACTCAAAGTTCAATTTAAGTCGATACCTTCAATTGACCGAGTTAATTGTAGTAAGCGGCATTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7760#0 GTCAAGGTAGTGCAAAAGCTAAATATAAAACTCGATTAAAACAACTTGTTCATTGGTGTG 60 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 GGAAAAAGTTTGATGGTGTGATTGTGTTTGACGAATGTCATCGAGCTAAAAATNTAACTC 120 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 CTAGTGGTTCTCAAAAACCTACAAAAACAGGTCTAACTGTGCTTGAATTACAGAACAAAC 180 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 TACCAAATGCTCGGATTGTTTATGCTAGTGCAACAGGTGCCACTGAGCCTCGTAACATGG 240 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 CTTATATGACGCGTCTAGGATTGTGGGGAGATGGGACACCATTTAAAACCTTTAATTCAT 300 consensus_7760#1 ------------------------------------------------------------ consensus_7760#0 TCATCCAAACACTTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGA 360 consensus_7760#1 ------------TTGAGCGACGTGGTGTAGGTGCTATGGAGTTGGTTGCTATGGACATGA 48 ************************************************ consensus_7760#0 AACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTA 420 consensus_7760#1 AACTACGTGGGATGTATATTGCACGGCAGCTCAGTTTTCATGGTGTGAATTTCAGCATTA 108 ************************************************************ consensus_7760#0 ATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATC 480 consensus_7760#1 ATGAAGTACTAATAGAAAACGTCAAATTAGGGCATGAAAGTTTTATCCAAGTCTATAATC 168 ************************************************************ consensus_7760#0 AGTCAACTGACCTG-TGGGTATATGCATATCGCTTCTTCTCAGAAGCATCACGTTTATTA 539 consensus_7760#1 AGTCAACTGACCTGGTTAGTGTTCCTTCATT-TTTCTCTTTTATCTCAACACGATCAGTA 227 ************** * ** * ** **** * ** **** * * ** consensus_7760#0 GATCTAAGTGACCGTTATCGTAAAACTATGTGGGGACAATT-TTGGTCTGCTCATCAACG 598 consensus_7760#1 TACTCCGATGGTTAATA-CGTAGTTTGTTTAACAAATAATTATTAATATTCTC-TGACAT 285 * ** ** **** * * **** ** * * *** * * consensus_7760#0 ATTTTTTAAATATCTTTGCATTGCTGCCAAAGTGGAAACATGTGTTGAAATTGC-TAAAA 657 consensus_7760#1 ATGGCATGCATTAATCACTATAGGTGTTATGTTCAGTATATTTTTTAGAAGCACGTGGAA 345 ** * ** * ** * ** * * * ** * ** ** * * ** consensus_7760#0 CTGCTGTTGATGAGGGTAAAT-GTGTTGTCATTGGTCTTCAGTCTACTGGTGAAGCTAAA 716 consensus_7760#1 CTAACCACTTTAAGCAGAAACCACGAAAGTGAGACACTTTTGTTTATCCGTCAAG-TATA 404 ** * ** *** * *** ** ** ** *** ** * consensus_7760#0 ACTCTAGAACAAGTTGAAGA---------------------------------------- 736 consensus_7760#1 TCTCTAAACATCGTAGTAGCTCACGAATTAGAGTACAAATTTTCTCTAAATGATCTAACT 464 ***** * ** * ** consensus_7760#0 ------------------------------------------------------------ consensus_7760#1 CAAAGTTCAATTTAAGTCGATACCTTCAATTGACCGAGTTAATTGTAGTAAGCGGCATTC 524 consensus_7760#0 -- consensus_7760#1 AT 526 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||