These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1178 fasta sequence [TGAGGCAACCCCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATAAAATTAGTGAACAAATTTTAAAAGACCATACATTTNGCATTTAGTTCTGATATATCATGTATAACTACACAAGGTTTTTTAACTAATGAAATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCGTCTTCTTGGTCTTGGTCTTCTTCTTCTTCTACTACTACTTCTACCACTGCTAATTCTTCTGGTGTATTAGATTCTACATTGAATAGTCTAAATTCAAGTCTTTATTCACCTACTACAAATAATACTACAATATGTAGTACAACCATTAATACAACAAATTATTCTGGTACATCTACTCCTTCTGATGTGAATACTATATTAGCAGCTGAAATATCTGGTTATGCATCAGTACTTCAGTTAGCTTATCGATTATGTCCAACAGTTTGGGACTCTCGTGGACCGTTAGTTCCACTTGACTGGATTTTACAAAGATGCAGTGAATTAGCTGCATCGAGATCCCAAACTGGTGTAGCTGATAGTTCCAGTAAATAAATGAATAAAACTTGATCAATATGGAATTCTAAACATCTTTAAATTATGTTATGATAGAATTCTTATTGAGATTCATGCATTATTGAAATATCTTGTATTCAGTTGACTTTCTATGATGTTATCTCTTGTACATTGATGTTTAAATTCTTTAAGAATACACATTT] [+] EMBL CD082129 [TGAGGCAACCCCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATAAAATTAGTGAACAAATTTTAAAAGACCATACATTTNGCATTTAGTTCTGATATATCATGTATAACTACACAAGGTTTTTTAACTAATGAAATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCGTCTTCTTGGTCTTGGTCTTCTTCTTCTTCTACTACT ] [-] EMBL CD075744 [ AAATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCGTCTTCTTGTTCTTGTTCTTCTTCTTCTTCNACNACTACTTCTACCACTGCTAATTCTTCTGGTGTATTAGATTCTACATTGAATAGTCTAAATTCAAGTCTTTATTCACCTACTACAAATAATACTACAATATGTAGTACAACCATTAATACAACAAATTATTCTGGTACATCTACTCCTTCTGATGTGAATACTATATTAGCAGCTGAAATATCTGGTTATGCATCAGTACTTCAGTTAGCTTATCGATTATGTCCAACAGTTTGGGACTCTCGTGGACCGTTAGTTCCACTTGACTGGATTTTACAAAGATGCAGTGAATTAGCTGCATCGAGATCCCAAACTGGTGTAGCTGATAGTTCCAGTAAATAAATGAATAAAACTTGATCAATATGGAATTCTAAACATCTTTAAATTATGTTATGATAGAATTCTTATTGAGATTCATGCATTATTGAAATATCTTGTATTCAGTTGACTTTCTATGATGTTATCTCTTGTACATTGATGTTTAAATTCTTTAAGAATACACATTT] consensusID : consensus_7794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 750 fasta sequence [TTGATCTCGTGTCACCTGATCCAAAAATAATAGTGAATGAAGAGGAATCTACAAATTTACGGGAGCCATCGTCATAACGTTCATCGATTAGTGAATGTGCCAATAAGCTAGGTTTATGGAAAAAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTCATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAG-GC-GTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATANAATTAGTGAACAAATTTTANAAGACCATACATTTGCATTTAGTTCTGATGTATCATGTA] [-] EMBL CD165899 [TTGATCTCGTGTCACCTGATCCAAAAATAATAGTGAATGAAGAGGAATCTACAAATTTACGGGAGCCATCGTCATAACGTTCATCGATTAGTGAATGTGCCAATAAGCTAGGTTTATGGAAAAAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTCATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATT ] [+] EMBL CD065207 [ AAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTCATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATCCTTCTAAAGCATTGGGTATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCATCTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTCATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAG GC GTTTAGTGCAAATATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTGATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGTTAACTCAATTATCATTATTATTAGCTAATANAATTAGTGAACAAATTTTANAAGACCATACATTTGCATTTAGTTCTGATGTATCATGTA] [+] EMBL CD082140 [ CAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCTGGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTTCAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGAGCAGTTTAGTGCAAATA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7794#0 ------------------------------------------------------------ consensus_7794#1 TTGATCTCGTGTCACCTGATCCAAAAATAATAGTGAATGAAGAGGAATCTACAAATTTAC 60 consensus_7794#0 ------------------------------------------------------------ consensus_7794#1 GGGAGCCATCGTCATAACGTTCATCGATTAGTGAATGTGCCAATAAGCTAGGTTTATGGA 120 consensus_7794#0 ------------------------------------------------------------ consensus_7794#1 AAAAGTGTATTGATCGTTGCCGTTGTGCTTTAGAATTGGTACTTCAAAGATTACCACTTC 180 consensus_7794#0 ----------------TGAGGCAACCCCT--ATATTTACATGCTTCACATTTAAAAGATC 42 consensus_7794#1 ATTATAAAGCAATGTATCGACTAGCCTCTCTATATTTACATGCTTCACATTTAAAAGATC 240 * * ** ** ***************************** consensus_7794#0 CTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCAT 102 consensus_7794#1 CTTCTAAAGCATTGGATATATTATTGGGACCAACAGATGAATCTCAAAAACATTTAGCAT 300 ************************************************************ consensus_7794#0 CTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTC 162 consensus_7794#1 CTATTCATGTTAACACTTTGAACAATAACAATAATGTTAACACTACAAATACATCTACTC 360 ************************************************************ consensus_7794#0 ATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCT 222 consensus_7794#1 ATTTGAATATTGGCGGTTTATTCAAAGATAGGAAACAGAATAACTTTTTCTATGGTGTCT 420 ************************************************************ consensus_7794#0 GGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTT 282 consensus_7794#1 GGCGTATTCCAACGGCTGATATTGATCGAAGTGGTAATTTCGCAGCTCATATGTACCGTT 480 ************************************************************ consensus_7794#0 CAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAA 342 consensus_7794#1 CAGTTTGCTTAACCCTGTCTTTACTTCATGATCATGGTGATTGGAGGCGTTTAGTGCAAA 540 ************************************************************ consensus_7794#0 TATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTG 402 consensus_7794#1 TATTTCATCAGTTAAGGAAACAACCTCCGGAAGAGAAGAGAGGATTTCTTGGTGAAGGTG 600 ************************************************************ consensus_7794#0 ATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGT 462 consensus_7794#1 ATCGTGTTTATTTAGCTAGACGTGCATTCAATTTAATTCAACCTACATTATTAAATTGGT 660 ************************************************************ consensus_7794#0 TAACTCAATTATCATTATTATTAGCTAATAAAATTAGTGAACAAATTTTAAAAGACCATA 522 consensus_7794#1 TAACTCAATTATCATTATTATTAGCTAATANAATTAGTGAACAAATTTTANAAGACCATA 720 ****************************** ******************* ********* consensus_7794#0 CATTTNGCATTTAGTTCTGATATATCATGTATAACTACACAAGGTTTTTTAACTAATGAA 582 consensus_7794#1 CATTTG-CATTTAGTTCTGATGTATCATGTA----------------------------- 750 ***** ************** ********* consensus_7794#0 ATTTTAATACAAATTTATCGACTTCATTGTGTATCATATTCACGGAATTCTTCCACTTCG 642 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 TCTTCTTGGTCTTGGTCTTCTTCTTCTTCTACTACTACTTCTACCACTGCTAATTCTTCT 702 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 GGTGTATTAGATTCTACATTGAATAGTCTAAATTCAAGTCTTTATTCACCTACTACAAAT 762 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 AATACTACAATATGTAGTACAACCATTAATACAACAAATTATTCTGGTACATCTACTCCT 822 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 TCTGATGTGAATACTATATTAGCAGCTGAAATATCTGGTTATGCATCAGTACTTCAGTTA 882 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 GCTTATCGATTATGTCCAACAGTTTGGGACTCTCGTGGACCGTTAGTTCCACTTGACTGG 942 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 ATTTTACAAAGATGCAGTGAATTAGCTGCATCGAGATCCCAAACTGGTGTAGCTGATAGT 1002 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 TCCAGTAAATAAATGAATAAAACTTGATCAATATGGAATTCTAAACATCTTTAAATTATG 1062 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 TTATGATAGAATTCTTATTGAGATTCATGCATTATTGAAATATCTTGTATTCAGTTGACT 1122 consensus_7794#1 ------------------------------------------------------------ consensus_7794#0 TTCTATGATGTTATCTCTTGTACATTGATGTTTAAATTCTTTAAGAATACACATTT 1178 consensus_7794#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||