These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 489 fasta sequence [TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGAGGTGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACGAACCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGCCTCTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGTCGGAAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTAAAACGTTGTTTA] [+] EMBL AI975072 [TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGAGGTGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACGAACCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGCCTCTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGTCGGAAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTAAAACGTTGTTTA] [+] EMBL CD132502 [ GAATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCA ] [-] EMBL CD132513 [ AATCTGTGAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAACTGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTGTCAAGAAAATAGAAACAGATAAACCAA ] consensusID : consensus_7805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 453 fasta sequence [CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACGAGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGATATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAAGCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTAAACAAATGGTACAATGAACAGTACTTGAATAATGGCAACAACAGTTGGACTAAACAACGTTTTACGATCATTTGTCCAGAGTGGAGT] [+] EMBL CD187997 [CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACGAGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGATATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAAGCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTAAACAAATGGTACAATGAACAGTACTTGAATAATGGCAACAACAGTTGGACTAAACAACGTTTTACGATCATTTGTCCAGAGTGGAGT] [+] EMBL CD187926 [CTCGGAGATTTCAGCGAAAGCAAACAACCCGATGAAGATGACAAAAGATATCAGGCTATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAAAACGAGCAACTAGACACTGTAACAAAAGATACATGAAAACGAGCACGGAACTCTGGATATTGATATAGTTGTGCCAGTCAGTTGGCCAAAGAACTCCAAGGAATGGACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAGAATTTCAATTAGTGGAAACGCAGATTCCCATAAGCTTTTGTTTTCTCCAGAAAAATTGCTTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTAAACAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7805#0 --TACCGATTGCTACCAAATTATTTACCACTCCGATGCCACTCAGAAAGAAGACCAATGA 58 consensus_7805#1 CTCGGAGATTTCAGCGAAAGCA---AACAACCCGATGAAGATGACAAAAGATATCAG-GC 56 **** * * *** * * ** ****** * * *** * * ** * consensus_7805#0 GGTGGTAACGAGGGGTCGTAGTAAATCAACTAGTCGGGGTACTTCAAAAATTCGTTCACG 118 consensus_7805#1 TATTACAGCGGTAGTCGATATTTCGGTGCCCTGTAGTAACCATTCGACCAATAGGGAGAA 116 * * ** * ** * * ** * *** * * * * consensus_7805#0 AACCCCAAGCTCTGCACGGTCTCGATCAAAAACACCTACTAGGCGAGCGCGTACGCCCGC 178 consensus_7805#1 AACGAGCAACTAGACACTGT---AACAAAAGATACATGA-AAACGAGCACGGAA------ 166 *** * ** *** ** * *** * ** * * ***** ** * consensus_7805#0 CTCTGAGTCCAAGGTGAGGCGTAGACGTTCTCCTAGCCCTGACCCTAGTGAAGAATCTGT 238 consensus_7805#1 CTCTGGATATT------GATATAG---TTGTGCCAGTC----AGTTGGCCAAAGAACTCC 213 ***** * * *** ** * * ** * * * ** * ** consensus_7805#0 GAAAAGTGTTACAAAAACAACCCAGTATACTGAGACTGTGTTTGATCGCCCTGCCCAAAC 298 consensus_7805#1 AAGGAATGG-ACGTGCAGGACCCCACAAACTTTTGTTATCTCCTGTTGGCCAAAG-AATT 271 * * ** ** * **** * *** * * * * * ** ** consensus_7805#0 TGACGTATTAAAATCATTGCCTCTAAACCATGGACTATCTCGTTTTTCCCAAAAAATTG- 357 consensus_7805#1 TCAATTAGTGGAAACGCAGATTC----CCATAAGCT-TTTGTTTTCTCCAGAAAAATTGC 326 * * ** * ** * * ** **** ** * * *** *** ******** consensus_7805#0 TCAAGAAAATAGAAACAGATAAACCAACTCATATCTATCAGGAAGGACTAGTTCACAAGT 417 consensus_7805#1 TTATTGAAATGGGTGCGAATATCAGAAGATTCAGCCAGTA--AACAAATGGTACAATGAA 384 * * **** * * *** ** * * * * ** * * ** ** consensus_7805#0 CGGAAGCGACCCAACTACACAAACCAGTAACACTAACTCCACTCTTGACAAATTATCGTA 477 consensus_7805#1 CAGTACTTGAATAATGGCA-ACAACAGTTGGACTAAA-CAACGTTTTACGATCATTTGTC 442 * * * ** ** * * **** ***** * ** ** ** * * ** consensus_7805#0 AAACGTTGTTTA 489 consensus_7805#1 CAGAGTGGAGT- 453 * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||