These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7813#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCTCCGAGGCCAAAATTCGGCACGAGGGCTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTACAGTCGTTTTACATCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACACCTACAAGTACCGTGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAACTTCATAATTGAATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG] [+] EMBL CD081883 [CCTCCGAGGCCAAAATTCGGCACGAGGGCTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTACAGTCGTTTTACATCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACACCTACAAGTACCGTGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAACTTCATAATTGAATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG] consensusID : consensus_7813#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 674 fasta sequence [TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATATTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATT-TTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACA-ACAATAAGTGGACAACGA-ACA-AATACACATATCGCTGTTACTACTAATACTACCGTCGCTTTAC-ATCATAATCATA-CTACATATAG-AATACACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCGCATAATACGACTTCAACAACATTGGAAAGTCAACGATTACACCTACCTAGTCTTCATN] [+] EMBL CD128280 [TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATATTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATT TTAGAAAGATTGGCAGCCAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACA ACAATAAGTGGACAACGA ACA AATACACATATCGCTGTTACTACT ] [-] EMBL CD065504 [ AAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAACTATGACACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCGTACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTCTTAGAAAGATTGCAAGCAAATGATATTGCTTGCTGATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTCGTATGTGAATTAGTGAAATTACCAAAGAGACGAACACACACTAAGTGGACAACGAGACAGAATACACATATCGCTGTTACTACTAATACTACCGTCGCTTTACTATCATAATCATATCTACATATAG AATAC ] [-] EMBL CD128508 [ GTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATT TTAGAAAGATTGCAAGCAAATGATATTGCTTGCTGATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAGACgata ] [-] EMBL CD127966 [ TATT TTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAACATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACA ACAATAAGTGGACAACGA ACA AATACACATATCGCTGTTACTACTAATACTACAGTCGCTTTAC ATCATAATCATA CTACAAATAGAAATA ACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCGCATAATACGACTTCAACAACATTGGAAAGTCAACGATTACACCTACCTAGTCTTCATN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7813#0 ------------------------------------------------------------ consensus_7813#1 TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATA 60 consensus_7813#0 --------CCTCCGAGGCCAAAATTCGGCACGAGGGCTT----TCAATTCATAGTTCAAC 48 consensus_7813#1 TTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAAC 120 * * * * * **** * *** * ** ***************** consensus_7813#0 TATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGG 108 consensus_7813#1 TATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGG 180 ************************************************************ consensus_7813#0 TGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAAC 168 consensus_7813#1 TGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAAC 240 ************************************************************ consensus_7813#0 ATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGA 228 consensus_7813#1 ATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGA 300 ************************************************************ consensus_7813#0 AAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGG 288 consensus_7813#1 AAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGG 360 ************************************************************ consensus_7813#0 TATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAG 348 consensus_7813#1 TATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAG 420 ************************************************************ consensus_7813#0 ACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTAC 408 consensus_7813#1 ACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTAC 480 ************************************************************ consensus_7813#0 AGTCGTTTTACATCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAAT 468 consensus_7813#1 CGTCGCTTTACATCATAATCATACTACATATAGAATACACTCAAGAGCGAAAGTCATAAT 540 **** ********************** ****** ********************** consensus_7813#0 TATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAAC 528 consensus_7813#1 TATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAAC 600 ************************************************************ consensus_7813#0 AACAACTGCTACTCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACAC 588 consensus_7813#1 AACAACTGCTACTCCGCATAATACGACTTCAACAACATTG--GAAAGTCAACGATTACAC 658 *************** ************************ *** ************** consensus_7813#0 CTACAAGTACCGTGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAA 648 consensus_7813#1 CTACCTAGTCTTCATN-------------------------------------------- 674 **** * consensus_7813#0 CTTCATAATTGAATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG 700 consensus_7813#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||