cluster # 7813

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Schistosoma mansoni
cluster # 7813 cluster # 7813 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7813#0 length = 700 sequences # 1

consensus_7813#1 length = 674 sequences # 4

consensusID : consensus_7813#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [CCTCCGAGGCCAAAATTCGGCACGAGGGCTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTACAGTCGTTTTACATCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACACCTACAAGTACCGTGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAACTTCATAATTGAATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG]

[+] EMBL CD081883             [CCTCCGAGGCCAAAATTCGGCACGAGGGCTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTACAGTCGTTTTACATCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACACCTACAAGTACCGTGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAACTTCATAATTGAATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG]




>consensus_7813#0
CCTCCGAGGCCAAAATTCGGCACGAGGGCTTTCAATTCATAGTTCAACTATGATACATGT
TATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAA
ATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCA
TACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGAAAGATTGCAAGC
AAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTG
TACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACAACAAT
AAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTACAGTCGTTTTACA
TCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAATTATTCATCTGCA
TCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTAC
TCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACACCTACAAGTACCG
TGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAACTTCATAATTGA
ATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG

consensusID : consensus_7813#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 674
fasta sequence

                              [TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATATTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATT-TTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACA-ACAATAAGTGGACAACGA-ACA-AATACACATATCGCTGTTACTACTAATACTACCGTCGCTTTAC-ATCATAATCATA-CTACATATAG-AATACACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCGCATAATACGACTTCAACAACATTGGAAAGTCAACGATTACACCTACCTAGTCTTCATN]

[+] EMBL CD128280             [TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATATTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAACTATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATT TTAGAAAGATTGGCAGCCAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACA ACAATAAGTGGACAACGA ACA AATACACATATCGCTGTTACTACT                                                                                                                                                                                                             ]
[-] EMBL CD065504             [                                                                         AAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAACTATGACACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCGTACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTCTTAGAAAGATTGCAAGCAAATGATATTGCTTGCTGATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAATATTTCGTATGTGAATTAGTGAAATTACCAAAGAGACGAACACACACTAAGTGGACAACGAGACAGAATACACATATCGCTGTTACTACTAATACTACCGTCGCTTTACTATCATAATCATATCTACATATAG AATAC                                                                                                                                                            ]
[-] EMBL CD128508             [                                                                                                                                                 GTTTTATCTACAGAAGCAAGACAATTTTGGATTGGTGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAACATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATT TTAGAAAGATTGCAAGCAAATGATATTGCTTGCTGATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAGACgata                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD127966             [                                                                                                                                                                                                                                                                                                   TATT TTAGAAAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGGTATACATTATTGTACTGAAACAAAACATTTTGTATGTGAATTATTGAAATTACCAAAGAGACGAACA ACAATAAGTGGACAACGA ACA AATACACATATCGCTGTTACTACTAATACTACAGTCGCTTTAC ATCATAATCATA CTACAAATAGAAATA ACTCAAGAGCGAAAGTCATAATTATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAACAACAACTGCTACTCCGCATAATACGACTTCAACAACATTGGAAAGTCAACGATTACACCTACCTAGTCTTCATN]




>consensus_7813#1
TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATA
TTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAAC
TATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGG
TGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAAC
ATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGA
AAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGG
TATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAG
ACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTAC
CGTCGCTTTACATCATAATCATACTACATATAGAATACACTCAAGAGCGAAAGTCATAAT
TATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAAC
AACAACTGCTACTCCGCATAATACGACTTCAACAACATTGGAAAGTCAACGATTACACCT
ACCTAGTCTTCATN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7813#0      ------------------------------------------------------------
consensus_7813#1      TGCTACAAACCATAATATTTCTTTACAGAACTATATTAATACAACACTTAATGCTCAATA 60
                                                                                  

consensus_7813#0      --------CCTCCGAGGCCAAAATTCGGCACGAGGGCTT----TCAATTCATAGTTCAAC 48
consensus_7813#1      TTACAAGCCATTGAAAGATTATATTCTGTACGGTGATTTAGTTTCAATTCATAGTTCAAC 120
                              * *   * *   * **** * ***  *  **    *****************

consensus_7813#0      TATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGG 108
consensus_7813#1      TATGATACATGTTATAATGGGTTGGGTTTTATCTACAGAAGCAAGACAATTTTGGATTGG 180
                      ************************************************************

consensus_7813#0      TGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAAC 168
consensus_7813#1      TGGATTAATTAAATTAATTGTGCATGAATTCAATGGTGAACATAGACATGTAATACAAAC 240
                      ************************************************************

consensus_7813#0      ATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGA 228
consensus_7813#1      ATGGACAGATCATACACCTGTAACTGTACGTTTTCTACATCATCATAGTCCTATTTTAGA 300
                      ************************************************************

consensus_7813#0      AAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGG 288
consensus_7813#1      AAGATTGCAAGCAAATGATATTGCTTGCTTATCTATAGATTATGCTAGTGGTAAATGGGG 360
                      ************************************************************

consensus_7813#0      TATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAG 348
consensus_7813#1      TATACATTATTGTACTGAAACAAAATATTTTGTATGTGAATTATTGAAATTACCAAAGAG 420
                      ************************************************************

consensus_7813#0      ACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTAC 408
consensus_7813#1      ACGAACAACAATAAGTGGACAACGAACAAATACACATATCGCTGTTACTACTAATACTAC 480
                      ************************************************************

consensus_7813#0      AGTCGTTTTACATCATAATCATACTACAAATAGAAATAACTCAAGAGCGAAAGTCATAAT 468
consensus_7813#1      CGTCGCTTTACATCATAATCATACTACATATAGAATACACTCAAGAGCGAAAGTCATAAT 540
                       **** ********************** ******   **********************

consensus_7813#0      TATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAAC 528
consensus_7813#1      TATTCATCTGCATCATCGTAACCATATTATAAAACATCATAAAAATATCTCCACTTCAAC 600
                      ************************************************************

consensus_7813#0      AACAACTGCTACTCCACATAATACGACTTCAACAACATTGNGGAATGTCAACGATTACAC 588
consensus_7813#1      AACAACTGCTACTCCGCATAATACGACTTCAACAACATTG--GAAAGTCAACGATTACAC 658
                      *************** ************************  *** **************

consensus_7813#0      CTACAAGTACCGTGCAGTCGAATGAAACTGTGACACATCAAGTAACTACACAGAAATAAA 648
consensus_7813#1      CTACCTAGTCTTCATN-------------------------------------------- 674
                      ****     *                                                  

consensus_7813#0      CTTCATAATTGAATGTTTAAATACATGTTGTAAAGAACAAAATAAATAAAGG 700
consensus_7813#1      ----------------------------------------------------