cluster # 7837

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Schistosoma mansoni
cluster # 7837 cluster # 7837 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7837#0 length = 827 sequences # 4

consensus_7837#1 length = 445 sequences # 1

consensusID : consensus_7837#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 827
fasta sequence

                              [GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATTATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAAC-AAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAATTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTAC-AGATAAAGTGAAATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTAAGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTCATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT]

[-] EMBL CD123848             [GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATTATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAGAAACAAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD078271             [                                                                                                       AAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAAC AAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAATTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTAC AGATAAAGTGAAATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTAAGAAAAAA                                                                                                   ]
[+] EMBL CD078355             [                                                                                                       AAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAAC AAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAATTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTANAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGCTGAA                                                                                                                                                                                                                ]
[-] EMBL CD072915             [                                                                                                                                                                                                                                                                                                                                                                     GATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAGTTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAAAACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACAC TTACAAGATAAAGTGAAATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTAAGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTCATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT]




>consensus_7837#0
GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATT
ATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTG
TTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGA
ATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAA
TTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTC
CAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATC
CAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAAC
AAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATG
AATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAG
TTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAA
AACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTACAGATAAAGTGA
AATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTA
AGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTC
ATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT

consensusID : consensus_7837#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [AACTTGAAAAAGAAAAAAATGAGTAAAATAAAGTTCGCCAACATTCTAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCNAGAAACAACGAACTGA]

[+] EMBL CD084423             [AACTTGAAAAAGAAAAAAATGAGTAAAATAAAGTTCGCCAACATTCTAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGGAATTCTCCNAGAAACAACGAACTGA]




>consensus_7837#1
AACTTGAAAAAGAAAAAAATGAGTAAAATAAAGTTCGCCAACATTCTAGTCGTCGTAAAA
AGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTGTTCAATATACTCGTC
GGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGAATAATTCAAATTTAG
AAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTCCAGCAAGCTTTAAAC
AAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATCCAGCTGTTGGAGATA
CTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAACAAGGTAAACATGAAT
CAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATGAATTGAGTAAAGTGG
AATTCTCCNAGAAACAACGAACTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7837#0      GTGTTTTGTGTGTACACTTGAAAAAGAAAAAAATGAGTAAAAATAAAGTTCGCCAACATT 60
consensus_7837#1      --------------AACTTGAAAAAGAAAAAAATGAGTAAAA-TAAAGTTCGCCAACATT 45
                                     *************************** *****************

consensus_7837#0      ATAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTG 120
consensus_7837#1      CTAGTCGTCGTAAAAAGTACAAAGAAGTAGTTCAATCGCGTGTAAACAGTAAAACTCCTG 105
                       ***********************************************************

consensus_7837#0      TTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGA 180
consensus_7837#1      TTCAATATACTCGTCGGTTAAAAACAAAAAAGCATAAAAAATTAAAAAATATTGGCGCGA 165
                      ************************************************************

consensus_7837#0      ATAATTCAAATTTAGGTATGTTCTACTTTTTTTCTTAGTATTTCGTTACAATCTTGCTAA 240
consensus_7837#1      ATAATTCAAATTTAG--------------------------------------------- 180
                      ***************                                             

consensus_7837#0      TTGTCTATTAATCAGAAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTC 300
consensus_7837#1      ---------------AAATATACAATCGTCCACCTAAAGCAAATGATGAAGATTATGTTC 225
                                     *********************************************

consensus_7837#0      CAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATC 360
consensus_7837#1      CAGCAAGCTTTAAACAAATGTTACTTATGAAAGAGGGTAAATGGAAACCTTTACTTGATC 285
                      ************************************************************

consensus_7837#0      CAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAAC 420
consensus_7837#1      CAGCTGTTGGAGATACTAAAGGTATGAAGAAAAAAGATGATCCAGTTCCTGTCTTAAAAC 345
                      ************************************************************

consensus_7837#0      AAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATG 480
consensus_7837#1      AAGGTAAACATGAATCAGATGCCCATTATTTGGGACGACTTCATAAAGAAGTTGAAGATG 405
                      ************************************************************

consensus_7837#0      AATTGAGTAAAGTGGAATTCTCCAAGAAACAACGAACTGAACTTGTTCCTATTACAGAAG 540
consensus_7837#1      AATTGAGTAAAGTGGAATTCTCCNAGAAACAACGAACTGA-------------------- 445
                      *********************** ****************                    

consensus_7837#0      TTAAACCAAGCAAAAAGAAACGTAAAGCTATAAAACGTTTAAATGATAAAAGAAAAGAAA 600
consensus_7837#1      ------------------------------------------------------------
                                                                                  

consensus_7837#0      AACGTTTACATGCTGTTGAAAAACGATTGACAGGTTTTGAACACNTTACAGATAAAGTGA 660
consensus_7837#1      ------------------------------------------------------------
                                                                                  

consensus_7837#0      AATTCAATGAAGTCGTTATGGCGCCTCCCGTACATTTGACTAAACCTAAAATGGTATTTA 720
consensus_7837#1      ------------------------------------------------------------
                                                                                  

consensus_7837#0      AGAAAAAATTAGATCAAGTACACAGTTTAGACAAATTGTTAACAACGTAAATACAACTTC 780
consensus_7837#1      ------------------------------------------------------------
                                                                                  

consensus_7837#0      ATCCTTTGTACATCTATACTAATTCCTATTAAATAAATAAAGAGAAT 827
consensus_7837#1      -----------------------------------------------