These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 991 fasta sequence [ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTGAAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGNNNNNNNNNNNNNNNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCATAAATATATTGGAGCTTATAAACTTCTCTCTGATATATCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGACATAGTNNNNNNNNNNNNNNNNNGCTATATGTATTCCTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCANACAGGTTACAATACTATAAAACAGAAGTTCTATTTATCAGTAATTGTACAGTTNTTTAAAACGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATCTTGATGTTTAACGTCTCCACTTTATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATGCTTCCAATATATACTGCCTTTTGGCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATTTTTCCCTTTTTATTCATATTTTCTGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAACTGCTTCCACTAATGTGGTACTCATCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTGACAACAACCCGTTTTACATTTGTGCCGGGTTTATGTTGAATACGACTGACCCCCTCTATGATTAAAAAATGTTTGGTAAAATACATGATTT] [+] EMBL CD080987 [ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTGAAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGNNNNNNNNNNNNNNNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCATAAATATATTGGAGCTTATAAACTTCTCTCTGATATATCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGACATAGTNNNNNNNNNNNNNNNNNGCTATATGTATTCCTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCANACAGGTTACAATACTATAAAACAGAAGTTCTATTTATCAGTAATTGTACAGTTNTTTAAAACGTTCTTTACCTA ] [-] EMBL CD074813 [ CTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCAAACAGGTTTCAATACTATAAAACAGAAGTTTTATTTATCAGTAATTGTACAGTTTTTTAAAACGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATCTTGATGTTTAACGTCTCCACTTTATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATGCTTCCAATATATACTGCCTTTTGGCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATTTTTCCCTTTTTATTCATATTTTCTGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAACTGCTTCCACTAATGTGGTACTCATCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTGACAACAACCCGTTTTACATTTGTGCCGGGTTTATGTTGAATACGACTGACCCCCTCTATGATTAAAAAATGTTTGGTAAAATACATGATTT] consensusID : consensus_7839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 436 fasta sequence [AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTTTTAAGAATACAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTATCACACTACGTTTGAAAGTGCCAATAGGTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCGTAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGC] [+] EMBL CD133081 [AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTTTTAAGAATACAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTATCACACTACGTTTGAAAGTGCCAATAGGTTTGTTAG ] [+] EMBL CD132662 [ AAGTAGCGGACACTTCTTGAAAGTGTTAAGATATCTCAAATGATTTTTAAGAATATAGCTATCTAGATACATGGAACCTAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACG TTGAAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAACTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCGTAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGC] consensusID : consensus_7839#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TTCGTCACGAGGTCAACGTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCACCCACTGAGTGGGATGGCTGTCCACATAAATATATTGGAGCTTATAAACTTCTCTCTGATATGTCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGA] [+] EMBL CD077840 [TTCGTCACGAGGTCAACGTCCGATTAATTGTTGAACAGATGCAACATTTAAAGTCTCAGGCAAAGGCTATCATACAAAACGCCCATAGAGATACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCACCCACTGAGTGGGATGGCTGTCCACATAAATATATTGGAGCTTATAAACTTCTCTCTGATATGTCTTGGATTTCTGAAGACGATCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGATAAAAACCAGATAATGCTAGATGTAAAACACATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7839#0 ANAATTTGGCACGAGGAACATTGTATCATTTAATGAACTATTCAAAATGAATCGCACCGA 60 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 GAGATGACGCTAGAAAATTAATGGATCCTAATAATTTAGTTGAATTAGCACACTACGTTG 120 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 AAAGTGCCAATAGTTTTGTTAGTGCAAATGCATGTTCTCAAC-TCCGATTAATTGTTGAA 179 consensus_7839#2 ------------------------TTCGT-CACGAGGTCAACGTCCGATTAATTGTTGAA 35 consensus_7839#1 -------------------------AAGGGTATGCTTCAAAGTAGCGGACACTTCTTGAA 35 * * ** ** * ** ***** consensus_7839#0 CA-GATGNNNNNNNNNNNNN--NNNNNNNNNNNGCTATCATACAAAACGCCCATAGAGAT 236 consensus_7839#2 CA-GATGCAACATTTAAAGT--CTCAGGCAAAGGCTATCATACAAAACGCCCATAGAGAT 92 consensus_7839#1 AGTGTTAAGATATCTCAAATGATTTTTAAGAATACAGCTATCTAGA---TACATGGAACC 92 * * * ** * * *** ** consensus_7839#0 ACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTG 296 consensus_7839#2 ACTTTGTTACATAATCTTCCCTGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTG 152 consensus_7839#1 TAGTTATTTCACTATATTCCTAATCATCTGATTGTATCATTTAATGAACTATTCAAAATG 152 ** ** ** ** **** * ** * * * * * * * * ** consensus_7839#0 TATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCA------------------ 338 consensus_7839#2 TATGAAAAGCCAGACGCTAGCCAGTATTTTAGTCTACTTTCACCCAC-TGAGTGGGATGG 211 consensus_7839#1 AATCGCA--CCGATAATTCACCATCATCTTTATGCATCAGAGATGACGCTAGAAAATTAA 210 ** * ** * *** ** ** * * consensus_7839#0 ---------TAAATATATTGGAGCTTATAAACTTCTCTCTGATATATCT-TGGATTTCTG 388 consensus_7839#2 CTGTCCACATAAATATATTGGAGCTTATAAACTTCTCTCTGATATGTCT-TGGATTTCTG 270 consensus_7839#1 TGGATCCTAATAATTTAGTTGAATTATCACACTACGTTTGAAAGTGCCAATAGGTTTGTT 270 *** ** * ** * * *** * * * * * * * *** * consensus_7839#0 AAGACGA-----TCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGA 443 consensus_7839#2 AAGACGA-----TCTTGATAACTACGAATCTAATCTCACAGCAGCACTCCAAATTATGGA 325 consensus_7839#1 AGTGCAAATGCATGTTCTCAACTCCGA--TTAATTGTTGAACAG-ATGCAACATTTAAAG 327 * * * * ** **** *** **** * *** * * * *** consensus_7839#0 TAAAAACCAGATAATGCTAGATGTAAAACACATGACATAGTNNNNNNNNNNNNNNNNNGC 503 consensus_7839#2 TAAAAACCAGATAATGCTAGATGTAAAACACATGA------------------------- 360 consensus_7839#1 TCTCAGGCAAAGGCTATCATACAAAACGCCCGTAGAGATACTTTGTTACATAATCTTCCC 387 * * ** * * * * ** * * * consensus_7839#0 TATATGTATTCCTCACATCAAAATAAGAAGTCTTTGTTACCTACATTTCTTTAATTCANA 563 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 TGTAATTTCGTAAAAAAACCCGGAAATGTTTATTACGTGTATGAAAAGC----------- 436 consensus_7839#0 CAGGTTACAATACTATAAAACAGAAGTTCTATTTATCAGTAATTGTACAGTTNTTTAAAA 623 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 CGTTCTTTACCTATTCATCTGACTTTTTGGGTTCATCTTGATGTTTAACGTCTCCACTTT 683 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 ATTTCCCTCTCAATTTATTTGGTTCTTTATTACAATGCTTCCAATATATACTGCCTTTTG 743 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 GCGCAAAATCCTCGCTTTGTTATTTGCTCAACCGATTTTTCCCTTTTTATTCATATTTTC 803 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 TGTGCCCAAAATTTGTTATTATTCCTGCCCCAACAACTGCTTCCACTAATGTGGTACTCA 863 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 TCCTGGTAATTTTATCTTTCTTTCCTAATGTACCTTGACAACAACCCGTTTTACATTTGT 923 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 GCCGGGTTTATGTTGAATACGACTGACCCCCTCTATGATTAAAAAATGTTTGGTAAAATA 983 consensus_7839#2 ------------------------------------------------------------ consensus_7839#1 ------------------------------------------------------------ consensus_7839#0 CATGATTT 991 consensus_7839#2 -------- consensus_7839#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||