These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 911 fasta sequence [AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTGTCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAGGCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTTGGTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAAGAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAAGTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATAATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAATATTTGATCACGTTTTACCATAACGCTCCATGATAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTAACAATTGACATTACAAGCGAAGTTGCATAGACAATAGCGTTTAGAGTTAAACAACGGATATTCAACCATGATTTCAAATGGTCAAATGACAATCGAACGTTTTCAAGTTGTTCATATTGATCAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAACAATCGTCGGAAGTTGTTTTGTAACATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCTAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGA] [-] EMBL CD098486 [AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTGTCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAGGCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTTGGTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAAGAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAAGTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATAATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAATATTTGATCACGTTTTACCATAA ] [+] EMBL CD126177 [ tctggTATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTGAAGAAGATAGTCCATGGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAAACCAAACTATGAAGTCCTAATATAAGTTCAATACCGATAGATAAAACCCTTCGGTATGGTCCGTAGCAATATAATGACGCGCATGATACATCTCCCAAATCGGGGGATGTTTTGAGTATTTGATCACGTTTTACCATAACGCTCCATGATAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCT ] [+] EMBL CD114646 [ GACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTAACAATTGACATTACAAGCGAAGTTGCATAGACAATAGCGTTTAGAGTTAAACAACGGATATTCAACCATGATTTCAAATGGTCAAATGACAATCGAACGTTTTCAAGTTGTTCATATTGATCAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAACAATCGTCGGAAGTTGTTTTGTAACATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCTAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGA] consensusID : consensus_7860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [ATCGTCGGAAGTTGTTTTGTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCTCATACAAATAGAGACTTAAAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCAAGTTTTATCTGCTTACCATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTATAAGCATGTTTTCGATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTGGAAAGTGTTGTAATCTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGACTGTGTAGCCACGATACTTGTACACATGGCCAATGATGGAGAGGGTTTTACAATTAAATGCCCTAGTGAAAGAAACAGCACTGTTTGATTTCAAGTTTGTCTAACTGGNGCAATATAAAGTCAGGGCAGTTAAGAAAATCTGATGAGTATAAATTACACAATTTTATGCGCAAATGATGNATAAAGATTGTATGCTCTAATCCATTACATAAATCCAGTAAACAG] [+] EMBL CD190099 [ATCGTCGGAAGTTGTTTTGTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCTCATACAAATAGAGACTTAAAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCAAGTTTTATCTGCTTACCATTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCATTATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTATAAGCATGTTTTCGATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTGGAAAGTGTTGTAATCTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGACTGTGTAGCCACGATACTTGTACACATGGCCAATGATGGAGAGGGTTTTACAATTAAATGCCCTAGTGAAAGAAACAGCACTGTTTGATTTCAAGTTTGTCTAACTGGNGCAATATAAAGTCAGGGCAGTTAAGAAAATCTGATGAGTATAAATTACACAATTTTATGCGCAAATGATGNATAAAGATTGTATGCTCTAATCCATTACATAAATCCAGTAAACAG] consensusID : consensus_7860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [ACGTGATATCGTAATTTCTTCAAACGTAACATTTACAAAGACTATCTTTAAACTATTTAACACAATATTCGTAAACTGAAAGACCGGTAAGGAAAAACGAGAATAGCATGATGAAATGTACAAGTCTTTTTACTGTGTGTAATATGTGAGTAATGCTGAATTTCTATCCAACGTAGATGTTTACTAAACAGTTCACATACATTAAAAATTGTTTGTGTTTACAGGGGCTAGTGGGTATCGTGGTAAAATTGTCAGTTGGCTGAACTAACCAGGATTAAACGTAACAACAAAAAAGTAACGATATGACATTCACTAAACAAAACGAACTAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTA] [+] EMBL CD128309 [ACGTGATATCGTAATTTCTTCAAACGTAACATTTACAAAGACTATCTTTAAACTATTTAACACAATATTCGTAAACTGAAAGACCGGTAAGGAAAAACGAGAATAGCATGATGAAATGTACAAGTCTTTTTACTGTGTGTAATATGTGAGTAATGCTGAATTTCTATCCAACGTAGATGTTTACTAAACAGTTCACATACATTAAAAATTGTTTGTGTTTACAGGGGCTAGTGGGTATCGTGGTAAAATTGTCAGTTGGCTGAACTAACCAGGATTAAACGTAACAACAAAAAAGTAACGATATGACATTCACTAAACAAAACGAACTAGTAAATTAAGATTGCTTAATTCTCTTGTAGATGGTTCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACTGTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGACATCATATAATGTTCAACTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7860#0 AGCAACTTTGAATCATTGATACTAGTAAAGTTACCAAAGAAATACTTTCATAAAACATTG 60 consensus_7860#2 ------------------------------------------------------------ consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 TCAGGATTAATAAACCAACCCCAGGATGAACAAAGTCGTTATCACTAGAAATCCCGTTAG 120 consensus_7860#2 ---------------------------ACGTGATATCGTAATTTCTTCAAA---CGTAAC 30 consensus_7860#1 ----------------------------------------ATCGTCGGAAGT--TGTTTT 18 ** ** ** consensus_7860#0 GCAGATGAACATCTTTTGGTGAAGACAGTAGAGAAGTATTTATAGCTGGACAAACTCTT- 179 consensus_7860#2 ATTTACAAAGA-CTATCTTTAAACTATTTAACACAATATTCGTAAACTGAAAGACCGGTA 89 consensus_7860#1 GTAACTAAGAGGTTATGGAAAAACAGTATAAGCAATTAGGCTCATACAAATAGAGACTTA 78 * * * ** ** * ** * * * * * consensus_7860#0 -GGTATATCTGTATCTTCAGAAGTAAACTTTCCATACAAAAAGGATTCATACAAGGACTG 238 consensus_7860#2 AGGAAAAACGAGAATAGCATGATGAAAT-----GTACAAGTCTTTTTACTGTGTGTAAT- 143 consensus_7860#1 AAAAGTGTTCATAGGAAAACCAATTGGCATGTCTAATAAGCAAGTTTTATCTGCTTACCA 138 * * * * ** ** * * consensus_7860#0 AAGAAGATAGTCCAT-----------GGATTTCTTAGTAAAGGTAGAAGGGTTTTCGGAA 287 consensus_7860#2 ATGTGAGTAATGC-T-----------GAATTTCT-ATCCAACGTAGATG---TTT----- 182 consensus_7860#1 TTATCAATACTTATTTTAGCCTGACCAAGTTGTTCAAGAAGTGTATCAAAGTCAT--GTT 196 ** * * ** * * * *** * consensus_7860#0 ACCAAACTATGAAGTCCTAATATA--AGTTCAATACCGATAGAT-AAAACCCTTCGGTAT 344 consensus_7860#2 ACTAAACAGTTCACATACATTAAA--AATTGTTTGTGTTTACA--GGGGCTAGTGGGTAT 238 consensus_7860#1 GTGAAACAATCAACTGCCAATGAAGCATTTCAATACGGACAGTTAGAAATACATCAGCAT 256 **** * * * * * * ** * * * * ** consensus_7860#0 GGTCCGTAGCAATATAATGACGCGCATGATACATCT--CCCAAATCGGGGGATGTTTTGA 402 consensus_7860#2 ----CGTGGTAAAATTGTCAGTTGGCTGAACTAAC----CAGGATTAAACGTAACAACAA 290 consensus_7860#1 --TATGAAGCTGACTGATGAATTGTGTGAATTCACGAACTTTTGTATAAGCATGTTTTCG 314 * * * * * * *** * * consensus_7860#0 ATATTTGATCACGT----TTTACCATAACGCTCCATGATAGTAAATTAAGATTGCTTAAT 458 consensus_7860#2 AAAAGTAACGATATGACATTCACTA-AACAAAACGAACTAGTAAATTAAGATTGCTTAAT 349 consensus_7860#1 ATATGTAGCAACTAAAAACTCTTCCGCTTCCGTGACCATACTGTTGGAAAGTGTTGTAAT 374 * * * * * ** * ** * **** consensus_7860#0 TCTCTTGTAGATGGT-TCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACT 517 consensus_7860#2 TCTCTTGTAGATGGT-TCTTTGGCATGTGAAACGAGACCATTCAATGTCGATAGCAGACT 408 consensus_7860#1 CTTCTGATACAGACTATGTATAGAACTAGTATCGTCAACTTGTGACTGTGTAGCCACGAT 434 *** ** * * * * * * * * * ** * * * * * ** * consensus_7860#0 GTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGA 577 consensus_7860#2 GTTTAAACTTTTGACAGCTTCTGATGGTACGTTCTCTGCAATTTCATGCTGATTTTCAGA 468 consensus_7860#1 ACTTGTACACATG---GCCAATGATGGAGAGGGTTTTACAATTAAATGCCCTAGTGAAAG 491 ** ** ** ** ****** * * * ***** **** * * consensus_7860#0 CATCATATAATGTTCAACTTTAACAATTGACATTACAAGCGAAGTTGCATAGACAATAGC 637 consensus_7860#2 CATCATATAATGTTCAACTTTA-------------------------------------- 490 consensus_7860#1 AAACA-GCACTGTTTGATTTCA--AGTTTGTCTAACTGGNGCAAT-ATAAAGTCAG-GGC 546 * ** * **** * ** * consensus_7860#0 GTTTAGAGTTAAACAACGGATATTCAACCATGATTTCAAATGGTCAAATGACAATCGAAC 697 consensus_7860#2 ------------------------------------------------------------ consensus_7860#1 AGTTAAGAAAATCTGATGAGTATA-AATTACACAATTTTATGCGCAAATGATGNATAAAG 605 consensus_7860#0 GTTTTCAAGTTGTTCATATTGATCAAAGTTCGGTGTGACTGAAAAGTCCCGGCAATCAAC 757 consensus_7860#2 ------------------------------------------------------------ consensus_7860#1 ATTGT-ATGCTCTAATCCATTACATAAATCCAGTA-AACAG------------------- 644 consensus_7860#0 AATCGTCGGAAGTTGTTTTGTAACATTATCAATACTTATTTTAGCCTGACCAAGTTGTTC 817 consensus_7860#2 ------------------------------------------------------------ consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 AAGAAGTGTATCAAAGTCATGTTGTGAAACAATCAACTGCTAATGAAGCATTTCAATACG 877 consensus_7860#2 ------------------------------------------------------------ consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 GACAGTTAGAAATACATCAGCATTATGAAGCTGA 911 consensus_7860#2 ---------------------------------- consensus_7860#1 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||