These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1126 fasta sequence [ATTCGCGTTACGTCATCGACGTGTTAAGGCTGGTTCAAGAAGTATGGCTAGTGATCAAATATGTTATACTTTAGTCGGTTTGTCATCTGAAACAAAAACATATACTGAGCAAAAACTCAAAGACGATTTGCAGAACAGCAATGATAATGTGAAAAGAGAGGCACTTAAGGAACTCATTCGGCTAATTATTAATGGCGAGAAGTTCCCAAATTTATTAATGACTGTGATTCGCTTTGTTATGCCGTCACAGGATCACATGATTAAAAAGTTGTTGCTTTTATTCTGGGAAGTTGTGCCTAAGTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAATGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTCGTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTATGAAGCTGCAGGGACGCTGACAACACTAAGTTCTGCTCCTAGTGCCATTAAGGCAGCCGCAAGTTGTTACATTAATTTAATCCTGAAAGAAAGTGACAACAATGTAAAACTAATTGTATTGTCACGTCTCACTGATTTACGTCAGTATCATGAGCGTATTCTACAGGACCTAATTATGGATATCGTGCAGATCATANATGCATCTGATATGGAAGTTCGTCAGAAAACACTTAATTTAACGATGGATTTAGTGACAGCTCGTACAGCTGAAGAATTGATTAAGATATTTCGTAAGGAACTT] [-] EMBL CD094672 [ATTCGCGTTACGTCATCGACGTGTTAAGGCTGGTTCAAGAAGTATGGCTAGTGATCAAATATGTTATACTTTAGTCGGTTTGTCATCTGAAACAAAAACATATACTGAGCAAAAACTCAAAGACGATTTGCAGAACAGCAATGATAATGTGAAAAGAGAGGCACTTAAGGAACTCATTCGGCTAATTATTAATGGCGAGAAGTTCCCAAATTTATTAATGACTGTGATTCGCTTTGTTATGCCGTCACAGGATCACATGATTAAAAAGTTGTTGCTTTTATTCTGGGAAGTTGTGCCTAAGTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAAT ] [-] EMBL CD133624 [ TTGTGCTTAAGTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAATGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGT ] [-] EMBL CD165538 [ CAGTGTCTGGAACATCAGCATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTCGTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTAT ] [+] EMBL CD125427 [ ACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGTAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTCGTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTATGAAGCTGCAGGGACGCTGACAACACTAAGTTCTGCTCCTAGTGCCATTAAGGCAGCCGCAAGTTGTTACATTAATTTAATCCTGAAAGAAAGTGACAACAATGTAAAACTAATTGTATTGTCACGTCTCACTGATTTACGTCAGTATCATGAGCGTATTCTACAGGACCTAATTATGGATATCGTGCAGATCATANATGCATCTGATATGGAAGTTCGTCAGAAAACACTTAATTTAACGATGGATTTAGTGACAGCTCGTACAGCTGAAGAATTGATTAAGATATTTCGTAAGGAACTT] consensusID : consensus_7867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [ATTGCACGCGGGTTACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAGGTGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTT] [+] EMBL CD191269 [ATTGCACGCGGGTTACTAGTATGTGATGCTTATCGCAAAGATTTACAACACCCTAGGTGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAATTAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATCGACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCGAATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATTCTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTGATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAATTGTAGAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7867#0 ATTCGCGTTACGTCATCGACGTGTTAAGGCTGGTTCAAGAAGTATGGCTAGTGATCAAAT 60 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 ATGTTATACTTTAGTCGGTTTGTCATCTGAAACAAAAACATATACTGAGCAAAAACTCAA 120 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 AGACGATTTGCAGAACAGCAATGATAATGTGAAAAGAGAGGCACTTAAGGAACTCATTCG 180 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 GCTAATTATTAATGGCGAGAAGTTCCCAAATTTATTAATGACTGTGATTCGCTTTGTTAT 240 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 GCCGTCACAGGATCACATGATTAAAAAGTTGTTGCTTTTATTCTGGGAAGTTGTGCCTAA 300 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 GTACAGTTCAGACGGGAAACTGCTCCATGAAATGATACTAGTATGTGATGCTTATCGCAA 360 consensus_7867#1 ---------------------ATTGCACGCGG-GTTACTAGTATGTGATGCTTATCGCAA 38 * ** * * ************************* consensus_7867#0 AGATTTACAACACCCTAA-TGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAAT 419 consensus_7867#1 AGATTTACAACACCCTAGGTGAATTCATCCGTGGGTCAACTTTACGATTTCTGTGTAAAT 98 ***************** ***************************************** consensus_7867#0 TAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATC 479 consensus_7867#1 TAAAAGAACCTGAATTACTGGAGCCTATTATGCCATCTATTCAACAGTGTCTGGAACATC 158 ************************************************************ consensus_7867#0 GACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCG 539 consensus_7867#1 GACATGCATATGTTCGACGAAATGCAGTGCTGGCAATTTTTACGATATACAAAAACTTCG 218 ************************************************************ consensus_7867#0 AATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATT 599 consensus_7867#1 AATCGCTTATTCCGGATGCACCTGAGAAAATTCTAAGATTCCTCGAACAAGAGCAAGATT 278 ************************************************************ consensus_7867#0 CTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTG 659 consensus_7867#1 CTTCTTGCAAAAGGAATGCTTTTATGATGTTGCTTCATGTCAGTCAGAGTACTGCTCTTG 338 ************************************************************ consensus_7867#0 ATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAA 719 consensus_7867#1 ATTATCTTACTTCTTGTTTGGATGAAGTACAAAATTTCGGTGATATTCTTCAGCTCATAA 398 ************************************************************ consensus_7867#0 TTGTAGAGTTAATCTACAAAGTATGTCTCGCTAAACCTTCTGAAAGGTTACGGTTTATTC 779 consensus_7867#1 TTGTAGAGTT-------------------------------------------------- 408 ********** consensus_7867#0 GTTGTATTTACAGCTTATTACAATCTAGTAGTGCTGCTGTGCGCTATGAAGCTGCAGGGA 839 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 CGCTGACAACACTAAGTTCTGCTCCTAGTGCCATTAAGGCAGCCGCAAGTTGTTACATTA 899 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 ATTTAATCCTGAAAGAAAGTGACAACAATGTAAAACTAATTGTATTGTCACGTCTCACTG 959 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 ATTTACGTCAGTATCATGAGCGTATTCTACAGGACCTAATTATGGATATCGTGCAGATCA 1019 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 TANATGCATCTGATATGGAAGTTCGTCAGAAAACACTTAATTTAACGATGGATTTAGTGA 1079 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 CAGCTCGTACAGCTGAAGAATTGATTAAGATATTTCGTAAGGAACTT 1126 consensus_7867#1 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||