These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 105 fasta sequence [GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG] [+] EMBL CD093382 [GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG] [+] EMBL CD093218 [GTCAACATTTAAGAAAGTCATTTCTTCTGAGATAGAAATATTTCGGCTTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG] consensusID : consensus_7879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 96 fasta sequence [GTCAACATTTAAGAAAGTCATTTCTTCTTTTGGGAGATAGAATCTTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAATGGTATGACAGTCAG] [+] EMBL CD164117 [GTCAACATTTAAGAAAGTCATTTCTTCTTTTGGGAGATAGAATCTTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAATGGTATGACAGTCAG] consensusID : consensus_7879#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 93 fasta sequence [CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTTGTTTTCGAAATATTTCTATCTCCCAAAAGAAGAAATGACTTTCTTAAATGTTGA] [+] EMBL CD164169 [CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTTGTTTTCGAAATATTTCTATCTCCCAAAAGAAGAAATGACTTTCTTAAATGTTGA] consensusID : consensus_7879#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 83 fasta sequence [AAAGTCATTTCTTCTTTTGGGAGATAGAAATATTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAAAG] [+] EMBL CD164151 [AAAGTCATTTCTTCTTTTGGGAGATAGAAATATTTCGGCTCCAAAAACAACACTCCCTTCAGATCACAAAAGCTTAACAAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7879#0 GTCAACATTTAAGAAAGTCATTT-CTTCT-----GAGATAGAAATATTTCGGCTTCCAAA 54 consensus_7879#1 GTCAACATTTAAGAAAGTCATTT-CTTCTTTTGGGAGATAGAA-TCTTTCGGCT-CCAAA 57 consensus_7879#3 -------------AAAGTCATTT-CTTCTTTTGGGAGATAGAAATATTTCGGCT-CCAAA 45 consensus_7879#2 ---------CCTGACTGTCATAAGCTTTTGTGATCTGAAGGGAGTGTT--GTTTTCGAAA 49 * ***** *** * ** * * * ** * * * *** consensus_7879#0 AACAACACTCCCTTCAGATCACAAAAGCTTAACAAATGGTATGACAGTCAG 105 consensus_7879#1 AACAACACTCCCTTCAGATCACAA------------TGGTATGACAGTCAG 96 consensus_7879#3 AACAACACTCCCTTCAGATCACAAA------------AGCTTAACAAAAG- 83 consensus_7879#2 TATTTCTATCTCCCAAAAGAAGAAATG-------ACTTTCTTAAATGTTGA 93 * * ** * * * * ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||