cluster # 7883

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Schistosoma mansoni
cluster # 7883 cluster # 7883 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7883#0 length = 847 sequences # 2

consensus_7883#1 length = 484 sequences # 2
consensus_7883#2 length = 183 sequences # 1

consensusID : consensus_7883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence

                              [CAACTGTCCCAACCCTCGGTCGTACCAGAGCATCATCACTAAAGATATCCCCCTTAGGATGAATTTTCTGGTCCCTCCGCCTACTTTAAGTTGGACAACTCAATATTGTTGCTATCCCATACACTGGAAGTGTGACTAAACTAGTATAAGAATAAGCTGAAAGAGACCATGATAATGGGATTTGACAATGAAGGTATCAACTAAGTACCTTTCAAGAGGAGCAAGCTTTTTGTTTCTGTGAGATAATCACAACTTCTAGCAGAATAACTTAGGTAACAAGGCTCCAAATCAATCGCAATTGCTCAGATATATTTTTTTGCTCTGCTTTTTCTAGATTTTGGGTCTTAACATATTCTGTACACATATAACTCCTTAATGCCATCCCAACTTCCCTGCTTTCGATCTTGTTCACTTTTCCACTTACTATGATGTATTGCGGCAACTTGGGTAGATCCACATTTATTCAAGATTCTAAGTTGAATATGACGGACTGACCTAATAGAAGTCGATACGTTTGTCTGCTAAACGATTTTTTTTCAAAACAAAAATCTATAGGCATATTACATGCACCAGTAGGACTACACAATTTTAGTCTTCCAAATCGACAAGGCTTCCATCTTTGTTGACAGTTTTCAATATTCCAGAATTCAATAAAACATTCCATTCCAACTGAAGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAATTCCGCAATTTGGNTGGGTCCATTGTGCTAAAATGAAGAAGTGTAGGCAACCTAT]

[+] EMBL CD162063             [CAACTGTCCCAACCCTCGGTCGTACCAGAGCATCATCACTAAAGATATCCCCCTTAGGATGAATTTTCTGGTCCCTCCGCCTACTTTAAGTTGGACAACTCAATATTGTTGCTATCCCATACACTGGAAGTGTGACTAAACTAGTATAAGAATAAGCTGAAAGAGACCATGATAATGGGATTTGACAATGAAGGTATCAACTAAGTACCTTTCAAGAGGAGCAAGCTTTTTGTTTCTGTGAGATAATCACAACTTCTAGCAGAATAACTTAGGTAACAAGGCTCCAAATCAATCGCAATTGCTCAGATATATTTTTTTGCTCTGCTTTTTCTAGATTTTGGGTCTTAACATATTCTGTACACATATAACTCCTTAATGCCATCCCAACTTCCCTGCTTTCGATCTTGTTCACTTTTCCACTTACTATGATGTATTGCGGCAACTTGGGTAGATCCACATTTATTCAAGATTCTAAGTTGAATATGACGGACTGACCTAATAGAAGTCGATACGTTTGTCTGCTAAACGATTTTTTTTCAAAACAAAAATCTATAGGCATATTACATGCACCAGTAGGACTACACAATTTTAGTCTTCCAAATCGACAAGGCTTCCATCTTTGTTGACAGTTTTCAATATTCCAGAATTCAATAAAACATTCCATTCCAACTGA                                                                                                                                                                              ]
[-] EMBL CD202626             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TTGTTGACAGTTTTCAATATTCCAGAATTCAATAAAACATTCCATTCCAATGGTAGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAATTCCGCAATTTGGNTGGGTCCATTGTGCTAAAATGAAGAAGTGTAGGCAACCTAT]




>consensus_7883#0
CAACTGTCCCAACCCTCGGTCGTACCAGAGCATCATCACTAAAGATATCCCCCTTAGGAT
GAATTTTCTGGTCCCTCCGCCTACTTTAAGTTGGACAACTCAATATTGTTGCTATCCCAT
ACACTGGAAGTGTGACTAAACTAGTATAAGAATAAGCTGAAAGAGACCATGATAATGGGA
TTTGACAATGAAGGTATCAACTAAGTACCTTTCAAGAGGAGCAAGCTTTTTGTTTCTGTG
AGATAATCACAACTTCTAGCAGAATAACTTAGGTAACAAGGCTCCAAATCAATCGCAATT
GCTCAGATATATTTTTTTGCTCTGCTTTTTCTAGATTTTGGGTCTTAACATATTCTGTAC
ACATATAACTCCTTAATGCCATCCCAACTTCCCTGCTTTCGATCTTGTTCACTTTTCCAC
TTACTATGATGTATTGCGGCAACTTGGGTAGATCCACATTTATTCAAGATTCTAAGTTGA
ATATGACGGACTGACCTAATAGAAGTCGATACGTTTGTCTGCTAAACGATTTTTTTTCAA
AACAAAAATCTATAGGCATATTACATGCACCAGTAGGACTACACAATTTTAGTCTTCCAA
ATCGACAAGGCTTCCATCTTTGTTGACAGTTTTCAATATTCCAGAATTCAATAAAACATT
CCATTCCAACTGAAGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACG
ACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTA
CCAACTCTGAAATTCCGCAATTTGGNTGGGTCCATTGTGCTAAAATGAAGAAGTGTAGGC
AACCTAT

consensusID : consensus_7883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 484
fasta sequence

                              [ATTCCAACTGAGGGTCGTAAGAACTAGAAATGAATTGTTAGGAAGAAGAAAAATACTGGTAGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACCCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAATTCCGCAATTTGGCTGGGTCCATTGTGCTAAAATGAAGAAGTGTAGGCAACCTATATTCCCTTGAGAATCTGAAGGATGAAACAATGATCAAACAGAACTCGTTTTGTTCAATGCATTTCTGAATGGAGTTTAACAATTTTCGGCACGATTTCCAAGAGGATGGTAAAGATTACCTAGCATCCACAAGAAGACTTTGTTCGACTTGGCTTTATGAAGACATTAGTGTTTCGCGTGACTATTCCCTACTTTCATGCATTAGAAATAAATTGTTTTGTTACAAGAGTTCGAATTTTGACTGTTATAT]

[+] EMBL BG931441             [ATTCCAACTGAGGGTCGTAAGAACTAGAAATGAATTGTTAGGAAGAAGAAAAATACTGGTAGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACC                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD090024             [     AACTGAGGGTCGTAAGAACTAGAAATGAATTGTTAGGAAGAAGAAAAATACTGGTAGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAATTCCGCAATTTGGCTGGGTCCATTGTGCTAAAATGAAGAAGTGTAGGCAACCTATATTCCCTTGAGAATCTGAAGGATGAAACAATGATCAAACAGAACTCGTTTTGTTCAATGCATTTCTGAATGGAGTTTAACAATTTTCGGCACGATTTCCAAGAGGATGGTAAAGATTACCTAGCATCCACAAGAAGACTTTGTTCGACTTGGCTTTATGAAGACATTAGTGTTTCGCGTGACTATTCCCTACTTTCATGCATTAGAAATAAATTGTTTTGTTACAAGAGTTCGAATTTTGACTGTTATAT]




>consensus_7883#1
ATTCCAACTGAGGGTCGTAAGAACTAGAAATGAATTGTTAGGAAGAAGAAAAATACTGGT
AGAATTTCCTGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACCCCCGTCA
CCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAAT
TCCGCAATTTGGCTGGGTCCATTGTGCTAAAATGAAGAAGTGTAGGCAACCTATATTCCC
TTGAGAATCTGAAGGATGAAACAATGATCAAACAGAACTCGTTTTGTTCAATGCATTTCT
GAATGGAGTTTAACAATTTTCGGCACGATTTCCAAGAGGATGGTAAAGATTACCTAGCAT
CCACAAGAAGACTTTGTTCGACTTGGCTTTATGAAGACATTAGTGTTTCGCGTGACTATT
CCCTACTTTCATGCATTAGAAATAAATTGTTTTGTTACAAGAGTTCGAATTTTGACTGTT
ATAT

consensusID : consensus_7883#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [CAGTTTTCAATATTCCAGAATTCAATAAAACATTCCATTCCAACTGAGGGTCGTAAGAATGGTAGAATTTCCCGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAAT]

[-] EMBL CD130112             [CAGTTTTCAATATTCCAGAATTCAATAAAACATTCCATTCCAACTGAGGGTCGTAAGAATGGTAGAATTTCCCGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGAAAT]




>consensus_7883#2
CAGTTTTCAATATTCCAGAATTCAATAAAACATTCCATTCCAACTGAGGGTCGTAAGAAT
GGTAGAATTTCCCGATAGTTGAAATCTCTTTCTTAGTATACATATACACGACGACTCCCG
TCACCACAGTTGACACAACAGTTGCGATTCCCATAGCTCTAAGAGCTCTACCAACTCTGA
AAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7883#0      CAACTGTCCCAACCCTCGGTCGTACCAGAGCATCATCACTAAAGATATCCCCCTTAGGAT 60
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      ------------------------------------------------------------
                                                                                  

consensus_7883#0      GAATTTTCTGGTCCCTCCGCCTACTTTAAGTTGGACAACTCAATATTGTTGCTATCCCAT 120
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      ------------------------------------------------------------
                                                                                  

consensus_7883#0      ACACTGGAAGTGTGACTAAACTAGTATAAGAATAAGCTGAAAGAGACCATGATAATGGGA 180
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      ------------------------------------------------------------
                                                                                  

consensus_7883#0      TTTGACAATGAAGGTATCAACTAAGTACCTTTCAAGAGGAGCAAGCTTTTTGTTTCTGTG 240
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      -------------ATTCCAACTGAGGGTCGT--AAGAACTAGAAATGAATTGTT-----A 40
                                                                                  

consensus_7883#0      AGATAATCACAACTTCTAGCAGAATAACTTAGGTAACAAGGCTCCAAATCAATCGCAATT 300
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      GGAAGAAGAAAAATACTGGTAGAATTTCCT-GATAG------TTGAAATCTCTTTCT-TA 92
                                                                                  

consensus_7883#0      GCTCAGATATATTTTTTTGCTCTGCTTTTTCTAGATTTTGGGTCTTAACATATTCTGTAC 360
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      GTATACATATACACGACGACCC--CCGTCACCACAGTT---GACACAACAGTTGCGATTC 147
                                                                                  

consensus_7883#0      ACATATAACTCCTTAATGCCATCCCAACTTCCCTGCTTTCGATCTTGTTCACTTTTCCAC 420
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      CCATAG---CTCTAAGAGCTCTACCAACTCTGAAATTCCGCAATTTGGCTG------GGT 198
                                                                                  

consensus_7883#0      TTACTATGATGTATTGCGGCAACTTGGGTAGATCCACATTTATTCAAGATTCTAAGTTGA 480
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      CCATTGTGCTAAAATGAAGAAGTGTAGGCA-ACCTATATTCCCTTGAGAATCTGA----A 253
                                                                                  

consensus_7883#0      ATATGACGGACTGACCTAATAGAAGTCGATACGTTTGTCTGCTAAACGATTTTTTTTCAA 540
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      GGATGAAACAATGATCAAACAGAACTCGTTTTGTTCAATGCATTTCTGAATGGAGTTTAA 313
                                                                                  

consensus_7883#0      AACAAAAATCTATAGGCATATTACATGCACCAGTAGGACTACACAATTTTAGTCTTCCAA 600
consensus_7883#2      ------------------------------------------------------------
consensus_7883#1      --CAATTTTCGGCACGATTTCCAAGAGGATGGTAAAGATTACCTAGCATCCACAAGAAGA 371
                                                                                  

consensus_7883#0      ATCGACAAGGCTTCCATCTTTGTTGACAGTTTTCAATATTCCAGAATTCAATAAAACATT 660
consensus_7883#2      --------------------------CAGTTTTCAATATTCCAGAATTCAATAAAACATT 34
consensus_7883#1      CTTTGTTCGACTTGGCTTTATGAAGACA----TTAGTGTTTCGCGTGACTATTCCCTACT 427
                                                **    * * * ** *      * **     * *

consensus_7883#0      CCATTCCAACTGA----------------AGAATTTCCTGATAGTTGAAATCTCTTTCTT 704
consensus_7883#2      CCATTCCAACTGAGGGTCGTAAGAATGGTAGAATTTCCCGATAGTTGAAATCTCTTTCTT 94
consensus_7883#1      TTCATGCATTAGAA-------------ATAAATTGTTTTGTTACAAGAGTTCGAATTTTG 474
                          * **   **                * * * *   * **   **  **   ** * 

consensus_7883#0      AGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCAT 764
consensus_7883#2      AGTATACATATACACGACGACTCCCGTCACCACAGTTGACACAACAGTTGCGATTCCCAT 154
consensus_7883#1      ACTGT-TATAT------------------------------------------------- 484
                      * * *  ****                                                 

consensus_7883#0      AGCTCTAAGAGCTCTACCAACTCTGAAATTCCGCAATTTGGNTGGGTCCATTGTGCTAAA 824
consensus_7883#2      AGCTCTAAGAGCTCTACCAACTCTGAAAT------------------------------- 183
consensus_7883#1      ------------------------------------------------------------
                                                                                  

consensus_7883#0      ATGAAGAAGTGTAGGCAACCTAT 847
consensus_7883#2      -----------------------
consensus_7883#1      -----------------------