These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7898#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 748 fasta sequence [ACGACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATGACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACGTAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGGCCCATCTGGACTTACTGACAAACCAGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGATCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGACCACGTNTGGCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGGGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACCCATCATCGTCGCAATATTTTCGCATTCACCATACGTCTCCCATAATAGAATTCGGCGATCAAATCCAGCACTTGCGAGAAACGATCCATCAGAAGAAAATTTGCCACAATACACCTCACTTTCATGACCATTTAAAAGCATATTAGGTGACAGTAAATTCGATGTACGGG] [+] EMBL CD129837 [ACGACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATGACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACGTAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGGCCCATCTGGACTTACTGACAAACCAGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGATCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGACCACGTNTGGCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGGGATAGATT ] [-] EMBL CD139071 [ ACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATGACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACGTAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGACCCATCTGGACTTACTGACAAACCAGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGATCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGACCACGTCTGGCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTta ] [+] EMBL CD193393 [ GCTAGCTTCCAATTGTCGTAAATCCCAACCTTTCACAACATTGTCTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAGTAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGGTCCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTTGAGGAC ] [+] EMBL CD094868 [ ATGCGTTGTGCACTTTCAGTATCCCATAAGGCGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACCCATCATCGTCGCAATATTTTCGCATTCACCATACGTCTCCCATAATAGAATTCGGCGATCAAATCCAGCACTTGCGAGAAACGATCCATCAGAAGAAAATTTGCCACAATACACCTCACTTTCATGACCATTTAAAAGCATATTAGGTGACAGTAAATTCGATGTACGGG] consensusID : consensus_7898#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TGAATTAACAATGTTNTCATGACCTCTGAATTTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGCGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACTTTACACTAAATGATTCAGTGCGGATTCTGCTCATGAATTTTCAATACATTTTACTATGTTCTATGTTTACTAACAAATACTGACATATAATTGACTGACTTCAATGTATTTTCAACTATACTGAGGTCATCAACAAACCTTCCACTACTGAAAGTCTTAATACTCTAGTTAGGGGGTTAGGGAAAATAGTTGTCAAAGTGGCAAAGTATTACCATAGTGAACGAATTGATCATCCATAAGCCCCTTCAAGACTTTCTTACAATTTGGATTTACTTCTCAAGTAGTTCAGTAATGACTTTGTTTTAATACTTAATTGTTTCATCATATCTTCCAATATACATAAAACAAA] [-] EMBL CD189467 [TGAATTAACAATGTTNTCATGACCTCTGAATTTTTTAATGCGTTGTGCACTTTCAGTATCCCATAAGGCGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACTTTACACTAAATGATTCAGTGCGGATTCTGCTCATGAATTTTCAATACATTTTACTATGTTCTATGTTTACTAACAAATACTGACATATAATTGACTGACTTCAATGTATTTTCAACTATACTGAGGTCATCAACAAACCTTCCACTACTGAAAGTCTTAATACTCTAGTTAGGGGGTTAGGGAAAATAGTTGTCAAAGTGGCAAAGTATTACCATAGTGAACGAATTGATCATCCATAAGCCCCTTCAAGACTTTCTTACAATTTGGATTTACTTCTCAAGTAGTTCAGTAATGACTTTGTTTTAATACTTAATTGTTTCATCATATCTTCCAATATACATAAAACAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7898#0 ACGACGATTATCAATTGACCATGCACATCGAAGAAGATTCTTCTCGAATGTATGCTGATG 60 consensus_7898#1 ---------------------------------------TGAATTAACAATGTTNTCATG 21 * * * * * *** consensus_7898#0 ACCCGTAAAAATCTTTGTGCACCGATCTGCTGGAGCAAATGGACGAATATCCCACATACG 120 consensus_7898#1 ACCTCTGAATTTTTTAATGCGTTGTGCACTTTCAG------------TATCCCATAAGGC 69 *** * ** * ** *** * * * ** ******* * consensus_7898#0 TAATGTGTTGTCCATGGAGTTAGAAAGTAAAAACGGCCCATCTGGACTTACTGACAAACC 180 consensus_7898#1 GATAGATTTATCTGAACTGGCAGTATATATAACCGAATCATCTGAAGAAAGCACTAAATC 129 * * ** ** * ** * ** ** ** ****** * * *** * consensus_7898#0 AGTAACTGTGTCCGTATGTCCACTAAGTAGCATGCTAGCTTCCAATTTTCGTAAATCCCA 240 consensus_7898#1 CAAAATAGCACCCCCATGACTTTACACTAAATGATTCAGTGCGGATTCT----GCTCATG 185 ** * ** *** * * ** * * * *** * ** consensus_7898#0 ACCTTTCACAACATTGT-CTATGCCCCCAGAAAATATCATTTCAGAAGTATCACTAAAAG 299 consensus_7898#1 AATTTTCAATACATTTTACTATGTTCT------ATGTTTACTAACAAATACTGACATA-- 237 * ***** ***** * ***** * ** * * * ** ** * * consensus_7898#0 TAACTGAAAGAACCTGATATGTGTTTTGGAATGTTTGTACACAGGCTTTTTGTCGCCGAT 359 consensus_7898#1 TAATTGACTGACTTCAA--TGTATTTTCAACTAT--------------------ACTGAG 275 *** *** ** * *** **** * * * * ** consensus_7898#0 CCCACAGACGAATCGTCCCATCGTCCGAACCGGAACACACATGTT-GAGGACCACGTNTG 418 consensus_7898#1 GTCATCAACAAACCTTCCACTACTGAAAGTCTTAATACTCTAGTTAGGGGGTTAGGGAAA 335 ** ** ** * *** * * * * ** ** * *** * ** * * consensus_7898#0 GCAACTGCACATGAATTAACAATGTTTTCATGACCTCTGAATTTTTAATGCGTTGTGCAC 478 consensus_7898#1 ATAGTTGTCAAAGTGGCAA-AGTATTACCATAGTGAACGAATTGATCATCCAT-AAGCCC 393 * ** * * ** * * ** *** ***** * ** * * ** * consensus_7898#0 TTTCAGTATCCCATAAGGGGATAGATTTATCTGAACTGGCAGTATATATAACCGAATCAT 538 consensus_7898#1 CTTCAAGACTTTCTTACAATTTGGATTTA-CTTCTCAAGTAGTTCA-GTAATGACTTTGT 451 **** * * * * ****** ** * * *** * *** * * consensus_7898#0 CTGAAGAAAGCACTAAATCCAAAATAGCACCCCCATGACCCATCATCGTCGCAATATTTT 598 consensus_7898#1 TTTAATACT-TAATTGTTTCATCATATCTTCCAATATACATAAAACAAA----------- 499 * ** * * * * ** *** * ** ** * * consensus_7898#0 CGCATTCACCATACGTCTCCCATAATAGAATTCGGCGATCAAATCCAGCACTTGCGAGAA 658 consensus_7898#1 ------------------------------------------------------------ consensus_7898#0 ACGATCCATCAGAAGAAAATTTGCCACAATACACCTCACTTTCATGACCATTTAAAAGCA 718 consensus_7898#1 ------------------------------------------------------------ consensus_7898#0 TATTAGGTGACAGTAAATTCGATGTACGGG 748 consensus_7898#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||