These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7922#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 711 fasta sequence [AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTACAAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAGGTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAATGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGTGAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAAAAATAATAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATCATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAACACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTTATTGATCCATTAACTACCACACTATCAATTTCACACAAACACTAAATCCTATCATCACATCACCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA] [+] EMBL CD110765 [AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTACAAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAGGTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAATGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGTGAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAA ] [+] EMBL CD147707 [ AATAATGTAAAAAATTGTTATAACCGATGAAAACATAGGAACGCAAATGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGTGAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCACTATTTACTACCATGAAAAATAATAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATCATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCCTTCCCTCTCTCA ] [-] EMBL CD155181 [ CTCATATCATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAACACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTTATTGATCCATTAACTACCACACTATCAATTTCACACAAACACTAAATCCTATCATCACATCACCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA] [-] EMBL CD134901 [ AAAGACTCATTAACACCACCTAAAAACATAAAACAAACAAACATTCAATTTACTCATTTCACAAATATTAACAAGACAAATCGCTAATATCATTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACAACACTGTTTGTTCACAAACAAACAATTCATAGTGGTGCATGTAGATATCATCACAGATTTATTGATCCATTAACTACC ] consensusID : consensus_7922#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [AATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGAAGCCGAATCAGCTGAATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTA] [+] EMBL CD134645 [AATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTGGAGATGTTCGTTCTGAAGAAGTTGAAGAATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGAAGCCGAATCAGCTGAATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTAGAAGATTTAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATAATTTCAATCGTACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGAATTA] consensusID : consensus_7922#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 105 fasta sequence [TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTTATTTCACTGGATTATACTCCCTGAATAACATCTTCAAACCCTAAACCTC] [+] EMBL CD064363 [TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTTATTTCACTGGATTATACTCCCTGAATAACATCTTCAAACCCTAAACCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7922#0 AAAAACACGCAAGCATATTTTTGTGCATTACAATCTATAAATGCCTCAGTATTAATTTAC 60 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 ------------------------------------------------------------ consensus_7922#0 AAAATAACACTAATGAATTAAAATGCACACGTGTCAAAAACTGCTGAGCTTTTATTTGAG 120 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 ------------------------------------------------------------ consensus_7922#0 GTCAGATAGACAAAATAATGTAAAAAATTGTTATAACCGATGAAAACATTGAAACGCAAA 180 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 ------------------------------------------------------------ consensus_7922#0 TGTTGGACACTAGAAACAGATCTCACAAATATGATCTAATGGAAGATATAGCACGGAAGT 240 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 ------------------------------------------------------------ consensus_7922#0 GAATGTCAAAACGAAGACAAAGAAAGAAAATAATTCNCTATTTACTACCATGAAAAATAA 300 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 ------------------------------------------------------------ consensus_7922#0 TAATTCAAGCTAAAAACAATCAAAACACTCAAAATACCCACCAAGCAAATATCTCATATC 360 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 ------------------------------AATTAGAAGATTTAATGGTTGATGTTGAAC 30 consensus_7922#0 ATCTTCCTACAACATCATCAACTCCAAAAGACTCATTAACACCACCTAAAAACATAAAAC 420 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 GTGCCAATGGATTAGCTAGTCAATTAGAACGTGGAGATGTTCGTTCTGAAGAAGTTGAAG 90 consensus_7922#0 AAACAAACATTCAATTTACT--CATTTCACAAATATTAACAAGACAAATCGCTAATATCA 478 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 AATTAAAACGTAAAATGAATGCTAAAATACAAGAATTAGAATCAGAAGCCGAATCAGCTG 150 consensus_7922#0 TTAACAGTAAAGTAACATCGCTCCATCTCTCACTCTGCTTTCAGATCTAAATCCAATACA 538 consensus_7922#2 ------------------------------------------------------------ consensus_7922#1 AATCAAAATGTGGACAATTAGAAAAAACTAAAGCACGTTTACAAGGTGAATTAGAAGATT 210 consensus_7922#0 ACACTGTTTGTTCACAAACAAACAGTTCATAGTGGTGCATGTAGATATCATCACAGATTT 598 consensus_7922#2 ----TACCAAAATCTAATCTTCCGAATCATAGTCCCTCTCTTTTTTATCCTTCCAAATTT 56 consensus_7922#1 TAATGGTTGATGTTGAACGTGCCAATGGATTAGCTAGTCAATTAGAACGTAAACAAAATA 270 ** * ** * * ** * * consensus_7922#0 ATTGATCCATTAACTACCACACTATCAATTTCACA--CAA-ACACTAAATCCTATCATCA 655 consensus_7922#2 ATT---TCACTGGATTATACTCCCTGAATAACATCTTCAA-ACCCTAAACCTC------- 105 consensus_7922#1 ATT---TCAATCG--TACATTAGCTGAATGGCAAAAGAAATATGCTGATTCTCAGGCTGA 325 *** ** * * * *** ** ** * ** * * consensus_7922#0 CATCACCTCTCCCTCAGACACTATCAATATCTATATCATTAGAAAATCAAAACCCA 711 consensus_7922#2 -------------------------------------------------------- consensus_7922#1 ATTA---------------------------------------------------- 329 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||