These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [GAGGATCCCGAATCTCGACAGTGTGCATTGTGAACTTTCCACACATTCGGCAGTTGACAATGGAGTGACAGTATTCATCTGTTTGCACCCCGACATGAGATCTGAAGTTGTTTGTGGATGACCCAGAAACGGCTGGAACATTTGAAGTCATGGGATTATTTGGACAGGATCCAGAGCTTAGATAACCAACACTAGGTTGTCCAACTTGAGGATATGATGAATTAGGATTGGCAGGTAGCTGAAGGTTAGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGTGTCCACCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGATCACTTTGTGAAAGAGTTCCAGAAGAAATACAATANAGACATTCGTAGCANTAAGCGTGCATTGCGTCGTCTGAGGACAGCGTGTGAACGTGCGATACGTACATTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGTGTGATGGTATTGATTTTACACGGTGATCACTCGTGCACGATTTNGAGAGTTGAATGCCGATCTATCCGTGNAACGTGGATTCCGNAGCTTNCTGANCGGGGAGCCT] [+] EMBL CD061206 [GAGGATCCCGAATCTCGACAGTGTGCATTGTGAACTTTCCACACATTCGGCAGTTGACAATGGAGTGACAGTATTCATCTGTTTGCACCCCGACATGAGATCTGAAGTTGTTTGTGGATGACCCAGAAACGGCTGGAACATTTGAAGTCATGGGATTATTTGGACAGGATCCAGAGCTTAGATAACCAACACTAGGTTGTCCAACTTGAGGATATGATGAATTAGGATTGGCAGGTAGCTGAAGGTTAGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGTGTCCACCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTA ] [+] EMBL CD171512 [ GTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGTGTCCATCTTGACGATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTGATACACACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGATCACTTTGTGAAAGAGTTCCAGAAGAAATACAATANAGACATTCGTAGCANTAAGCGTGCATTGCGTCGTCTGAGGACAGCGTGTGAACGTGCGATACGTACATTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGTGTGATGGTATTGATTTTACACGGTGATCACTCGTGCACGATTTNGAGAGTTGAATGCCGATCTATCCGTGNAACGTGGATTCCGNAGCTTNCTGANCGGGGAGCCT] consensusID : consensus_7936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCTGGCTCGAGGTCACATTCAGTAGACTAAAGTTGTATGATCTACATCATTGTGTATTTTTACCATATAGACTGGAGGATGTTTTTTTTCAAATGAAATTGATCATGTGTCGCAGGAATAGCACATATAAATAAACTACTTTTCTTGACAGTTTTCTCTAAATACATTTGTTATTTGCTGTATATCACTATTTAGAATTGTTAAACCAACACATTTGAGTGAAAAATACGAGTTCAGATAACAAGATTGAAATTACATCAGATGTTGTCCAAACTAGGACCTGAAAAAATACATACCCAATTAGCTATGTCATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAAAAATGAGGTATTTCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTTAACCAGGTCTGTTGAAAGATATCAACTCACTGAAGACATTGGTGAAATGGTTGCTCAACTTCGTGAATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCTAGCTCAGTGGTCTATCGGTTAAGTGCTCGCGCGCGAGACTAGTANGCCCTTGGTTCGAATCTCGCGAGGCGAGATCGTGGATGCGCACTACTGANGAG] [+] EMBL CD082248 [CCTGGCTCGAGGTCACATTCAGTAGACTAAAGTTGTATGATCTACATCATTGTGTATTTTTACCATATAGACTGGAGGATGTTTTTTTTCAAATGAAATTGATCATGTGTCGCAGGAATAGCACATATAAATAAACTACTTTTCTTGACAGTTTTCTCTAAATACATTTGTTATTTGCTGTATATCACTATTTAGAATTGTTAAACCAACACATTTGAGTGAAAAATACGAGTTCAGATAACAAGATTGAAATTACATCAGATGTTGTCCAAACTAGGACCTGAAAAAATACATACCCAATTAGCTATGTCATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATGAAAAATGAGGTATTTCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTTAACCAGGTCTGTTGAAAGATATCAACTCACTGAAGACATTGGTGAAATGGTTGCTCAACTTCGTGAATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGGCTAGCTCAGTGGTCTATCGGTTAAGTGCTCGCGCGCGAGACTAGTANGCCCTTGGTTCGAATCTCGCGAGGCGAGATCGTGGATGCGCACTACTGANGAG] consensusID : consensus_7936#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 498 fasta sequence [TATCTTAATCTTCACATCCATCATTCCCGATTCGTTTATGGTAATTACCCTGATAACATCCCTCTTATTACGTATTATATTTACACAACAATATTACTATTATTACGATTCCTATTATCATCATTACCTCAATTGAAAAAATGAAATTCTCCTACTATTCTGCTGATTGTGACTGGACACTTCACTCCAAATCATACTGACCTTTATTATATGACCGTTCTAATTTGCAAATAACACAATTTCGAAGTATCTCTGATGTAATAGAAGATACAAACGTTCACCATTATTAACATATACCGTTGTCAAATTCATTAAAACCTGCCTCAATTTAGCCTTTATAAAAGTTTATAGTTGATATCATGAGTCAATTGAAGCTAGACAACCATGGAAAATCTGGAAGCACTGGACGGCCGTTTCGTCCTATTGTGGGACTCACTCCTCAGCAGTGCGCATCCACGATCCCGCCTCGCGAGATTAGAACCCAGGATCTGTCAGTCT] [+] EMBL CD185272 [TATCTTAATCTTCACATCCATCATTCCCGATTCGTTTATGGTAATTACCCTGATAACATCCCTCTTATTACGTATTATATTTACACAACAATATTACTATTATTACGATTCCTATTATCATCATTACCTCAATTGAAAAAATGAAATTCTCCTACTATTCTGCTGATTGTGACTGGACACTTCACTCCAAATCATACTGACCTTTATTATATGACCGTTCTAATTTGCAAATAACACAATTTCGAAGTATCTCTGATGTAATAGAAGATACAAACGTTCACCATTATTAACATATACCGTTGTCAAATTCATTAAAACCTGCCTCAATTTAGCCTTTATAAAAGTTTATAGTTGATATCATGAGTCAATTGAAGCTAGACAACCATGGAAAATCTGGAAGCACTGGACGGCCGTTTCGTCCTATTGTGGGACTCACTCCTCAGCAGTGCGCATCCACGATCCCGCCTCGCGAGATTAGAACCCAGGATCTGTCAGTCT] consensusID : consensus_7936#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [AATGAATTAAACTCCAATACTGAGGAGGATATAACCGATTATGAACGCACTTGGTATGAAAATGCATGAAAAATGAAATCAGAGAAGATGGACTGATATTCGCAGAGGGAACAGTCACGATTGATACAATTGGTTATTTTGCAAATTAACTGTTTACTGTATGGTTGTCAGATTTTAGTGAGATAGTCTGTACCTTTCGTGCCAAATACATTCAATTGTCCCCACCCGTGTACTTTGTTCATTACAATACTACTAATGAGATTATCAAGTAATTTTGGAAGTGAACGTACATGAGTCGATCTTTTTTCTGTTTCCTCAAGTTATTTTTACAACAAATTTCAGATCTAAAATGGACATATGTCCACTTCCTAT] [+] EMBL CD089444 [AATGAATTAAACTCCAATACTGAGGAGGATATAACCGATTATGAACGCACTTGGTATGAAAATGCATGAAAAATGAAATCAGAGAAGATGGACTGATATTCGCAGAGGGAACAGTCACGATTGATACAATTGGTTATTTTGCAAATTAACTGTTTACTGTATGGTTGTCAGATTTTAGTGAGATAGTCTGTACCTTTCGTGCCAAATACATTCAATTGTCCCCACCCGTGTACTTTGTTCATTACAATACTACTAATGAGATTATCAAGTAATTTTGGAAGTGAACGTACATGAGTCGATCTTTTTTCTGTTTCCTCAAGTTATTTTTACAACAAATTTCAGATCTAAAATGGACATATGTCCACTTCCTAT] consensusID : consensus_7936#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [GCCGAGCACAATGAAGATCAAGATAGTTGCTCCACCTGAGCGTAAATATTCCGTTTGGATTGGTGGTTCTATTTTGGCGTCATTGTCTACACTCCAACAGATGTGGATTTCCAAACAAGAATATGATGAATCTGGTCCGGGTATTGTTCACCGTAAATGCTTCTAAGTTATATTGTGAGGCAAATAATTATGTAATATTTATTCGTAATCTTGTTGTGCAATAAAACCCTGAACATAACTTATCTTTGACCCCAAAAAAAAAAAAAAAAAA] [+] EMBL CD134486 [GCCGAGCACAATGAAGATCAAGATAGTTGCTCCACCTGAGCGTAAATATTCCGTTTGGATTGGTGGTTCTATTTTGGCGTCATTGTCTACACTCCAACAGATGTGGATTTCCAAACAAGAATATGATGAATCTGGTCCGGGTATTGTTCACCGTAAATGCTTCTAAGTTATATTGTGAGGCAAATAATTATGTAATATTTATTCGTAATCTTGTTGTGCAATAAAACCCTGAACATAACTTATCTTTGACCCCAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7936#3 ------------------------------------------------------------ consensus_7936#4 ------------------------------------------------------------ consensus_7936#1 ----------------------------CCTGGCTCGAGGTCACATTCAGTAGACTAAAG 32 consensus_7936#2 ------------------------------TATCTTAATCTTCACATCCATCATTCCCGA 30 consensus_7936#0 GAGGATCCCGAATCTCGACAGTGTGCATTGTGAACTTTCCACACATTCGGCAGTTGACAA 60 consensus_7936#3 ----------------AATGAATTAAACTCCAATAC-TGAGGAGGATATAACCGATTATG 43 consensus_7936#4 ------------------------------------------------------------ consensus_7936#1 TTGTATGATCTACATCATTGTGTATTTTTACCATAT-AGACTGGAGGATGTTTTTTTTCA 91 consensus_7936#2 TTCGTTTATGGTAATTACCCTGATAACATCCCTCTT-ATTACGTATTATATTTACACAAC 89 consensus_7936#0 TGGAGTGACAGTATTCATCTGTTTGCACCCCGACATGAGATCTGAAGTTGTTTGTGGATG 120 consensus_7936#3 AACGCACTTGGTATGAAAATGCATGAAAAATGAAATCAGAGAAGATGGACTGAT------ 97 consensus_7936#4 ------------------------------------------------------------ consensus_7936#1 AATGAAATTGATCATGTGTCGCAGGAATAGCACATATAAATAAACTACTTTTCTTGAC-A 150 consensus_7936#2 AATATTACTATTATTACGATTCCT-ATTATCATCATTACCTCAATTGAAAAAAT-----G 143 consensus_7936#0 ACCCAGAAACGGCTGGAACATTTGAAGTCATGGGATTATTTGGACAGGATCCAGAGCTTA 180 consensus_7936#3 ATTCGCAGAGGGAACAGTCACGATT-GATACAATTGGTTATTTTGCAA-ATTAA----CT 151 consensus_7936#4 ------GCCGAGCACAATGAAGATC-AAGATAGTTGCTCCACCTGAGC-GTAAA----TA 48 consensus_7936#1 GTTTTCTCTAAATACATTTGTTATTTGCTGTATATCACTATTTAGAATTGTTAAAC--CA 208 consensus_7936#2 AAATTCTCCTACTATTCTGCTGATTGTGACTGGACACTTCACTCCAAA--TCATAC--TG 199 consensus_7936#0 GATAACCAACACTAGGTTGTCCAACTTGAGGATATGATGAATTAGGATTGGCAGGTAGCT 240 * * * * consensus_7936#3 GTTTACT--GTATGGTTGTCAGATTTT--AG-TGAGATAGTCT-GTACCTTT-----CGT 200 consensus_7936#4 TTCCGTTTGGATTGGTGGTTCTATTTT--GG-CGTCATTGTCT-ACACTCCAACAGATGT 104 consensus_7936#1 ACACATTTGAGTGAAAAATACGAGTTC--AGATAACAAGATTG-AAATTACATCAGATGT 265 consensus_7936#2 ACCTTTATTATATGACCGTTCTAATTTGCAAATAACACAATTTCGAAGTATCTCTGATGT 259 consensus_7936#0 GAAGGTTAGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACATTTGATGT 300 * * ** consensus_7936#3 G-----CCAAATAC--ATTCA--ATTGTC--CCCACCCGTGTACTTTGTTCATTACAA-T 248 consensus_7936#4 GGATTTCCAAACAAGAATATG--ATGAAT--CTGGTCCGGGTA--TTGTTCACCGTAAAT 158 consensus_7936#1 TG---TCCAAACTAGGACCTG--AAAAAATACATACCCAATTAGCTATGTCATTATATAT 320 consensus_7936#2 AATAGAAGATACAAACGTTCACCATTATTAACATATACCGTTGTCAAATTCATTAAAACC 319 consensus_7936#0 GTCCACCTTGACGATTGAGGATGGTATATT-CGAGGTGAAGTCTACTGCTGGTGATACAC 359 * * * * * consensus_7936#3 ACTACTAA--T-GAGATTATCAAGTAATTTTGGAAGTGAACGTACATGAGTCGATCTTTT 305 consensus_7936#4 GCTTCTAAG-T-TATATTGTGAGGCAAATAATTATGT-AATATTTATTCGT-AATCTTGT 214 consensus_7936#1 ATATATATA-TATATATATATATATATATATATATATATATATATATATATGAAAAATGA 379 consensus_7936#2 TGCCTCAAT-TTAGCCTTTATAAAAGTTTATAGTTGATATCATGAGTCAATTGAAGCTAG 378 consensus_7936#0 ACTTGGGAGGTGAAGATTTTGACAATCGCATGGTGGATCACTTTGTGAAAGAGTTCCAGA 419 * * * * consensus_7936#3 TTCTGTTTCCTCAAGTTATTTTTACAACAAATTTCA----GATCTAA--AATGGACATAT 359 consensus_7936#4 T---GTGCAATAAAACCCTGAACATAACTTATCTTT----GACCCCA--AAAAAAAAAAA 265 consensus_7936#1 GG-TATTTCCTGGAGTTCTAGTGAGAAGCAGTAACCAGTGGAGTTTA--ACCAGGTCTGT 436 consensus_7936#2 AC--AACCATGGAAAATCTGGAAGCACTGGACGGCCGTTTCGTCCTATTGTGGGACTCAC 436 consensus_7936#0 AGAAATACAATANAGACATTCGTAGCANTAAGCGTGCATTGCGTCGTCTGAGGACAGCGT 479 * * consensus_7936#3 GTCCACTTCCTAT----------------------------------------------- 372 consensus_7936#4 AAAAAA------------------------------------------------------ 271 consensus_7936#1 TGAAAGATATCAACTCACTGA-AGACATTGGTGAAATGGTTGCTCAACTTCGTGAATTGG 495 consensus_7936#2 TCCTCAGCAGTGCGCATCCAC-GATCCCGCCTCGCGAGATTAGAACCCAGGATCTGTCAG 495 consensus_7936#0 GTGAACGTGCGATACGTACATTGAGTTCGAGTGCCCAGACGAATCTGGAGATTGACTCGT 539 consensus_7936#3 ------------------------------------------------------------ consensus_7936#4 ------------------------------------------------------------ consensus_7936#1 TTGAAGTTAGACATTAACACCGTTGGATGCCGGCTAGCTCAGTGGTCTATCGGTTAAGTG 555 consensus_7936#2 TCT--------------------------------------------------------- 498 consensus_7936#0 GTGATGGTATTGATTTTACACGGTGATCACTCGTGCACGATTTNGAGAGTTGAATGCCGA 599 consensus_7936#3 ------------------------------------------------------------ consensus_7936#4 ------------------------------------------------------------ consensus_7936#1 CTCGCGCGCGAGACTAGTANGCCCTTGGTTCGAATCTCGCGAGGCGAGATCGTGGATGCG 615 consensus_7936#2 ------------------------------------------------------------ consensus_7936#0 TCTATCCGTGNAACGTGGATTCCGNAGCTTNCTGANCGGGGAGCCT-------------- 645 consensus_7936#3 ------------- consensus_7936#4 ------------- consensus_7936#1 CACTACTGANGAG 628 consensus_7936#2 ------------- consensus_7936#0 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||