These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1138 fasta sequence [AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTAACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTTTTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGAAGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAGCACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTTATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTAAGTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTGTGTTTCCTGCGAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCTGTCACTAC] [+] EMBL CD074447 [AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTAACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTTTTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGAAGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAGCACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTTATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGC ] [+] EMBL CD074265 [AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTAACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTTTTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGAAGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAGCACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACATTCTTATTCAACATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAA ] [-] EMBL CD135232 [ TGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTAAG ] [-] EMBL CD132100 [ TTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTGTGTTTCCTGCGAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCTGTCACTAC] consensusID : consensus_7949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [GTAGGTTNNATACTTTAATATACCCATTCNTTATTCAACCATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTNCCTGGAGGAGACCTCCTCGTGCCGAATNTTGGCCCGA] [-] EMBL CD080348 [GTAGGTTNNATACTTTAATATACCCATTCNTTATTCAACCATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAAAGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATTATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAGGGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAATAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAACCATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGGCATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGGCTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTNCCTGGAGGAGACCTCCTCGTGCCGAATNTTGGCCCGA] consensusID : consensus_7949#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [ATACTATGACTAGGGCTGTTTTCTGATATTACTNTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGCCTCGTGCCGAATCTTGGCCG] [-] EMBL CD077571 [ATACTATGACTAGGGCTGTTTTCTGATATTACTNTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGACGTACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGTTAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCGGTGATACGATTGTGTTGACTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTGACGACTTGGTTCACCACTTTGAGCGTTTGCCTCGTGCCGAATCTTGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7949#0 AGAGATGCACTATATATTTGAAGATATTTCCTATTCAGAAATTATACTAAATGGCAGTTA 60 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 ACAATAATGTTTGTGCAGAGTACAAAGCAGTTTTGTCGTGAGAAGTAAAACTGTTTCTTT 120 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 TTACATGAAGGTCAAATCTATACAGGACTATGAGTAAATGTCCAACAACGGGTGATGAGA 180 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 AGCAAAGAAGGTAGGTAGTCTCCATTTGAAGATTGATAAACAATGTTTTTTACAGGATAG 240 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 CACTTGCACACATGGATGTTTCAACGATAATAAGTAGGTTATACTTTAATATACA---TT 297 consensus_7949#1 -----------------------------GTAGGTTN--NATACTTTAATATACCCATTC 29 consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 CTTATTCAAC-ATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAA 356 consensus_7949#1 NTTATTCAACCATTTAGAAGCGTACCAAAAAGCCCGTTCAAAATTACTGGAAACCAGGAA 89 consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 AGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATT 416 consensus_7949#1 AGTTATAGAAGGTTTGGGGAAACTCAATTTATAATATTACTTGAATAAAAAATAATAATT 149 consensus_7949#2 -------------------------------------------------ATACTATGACT 11 * * ** * * consensus_7949#0 ATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAG 476 consensus_7949#1 ATGCATTATCATCCATGACTTGGCTTTTCCAAAATCGTTATCCTTTTAATGGATTCTAAG 209 consensus_7949#2 A-GGGCTGTTTTCTGATATTACTNTGTGTCGAAAT-GCATTCATATCATCAGCATGTGAT 69 * * * * ** * * * * * **** * ** * * * * * * * consensus_7949#0 --GGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAA 534 consensus_7949#1 --GGGGTAAAAACGACATTAGATATCGGATCTTTTTATTTTTGAAGACTCTCCTCGACAA 267 consensus_7949#2 CCATACTTAAATGGATTTCCTGGAGGAGACCTTGTGTTTACTGGAGGATCCATTTTGTGA 129 * *** ** * * ** *** * ** ** ** ** * * consensus_7949#0 TAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAAC 594 consensus_7949#1 TAAGGGCAATACCATTTACCCTTAGGTTGAACCCGAACATCTACACATGAGAAGTGAAAC 327 consensus_7949#2 C--GTACGGTGTTATT-ACTTCGACATCCTCGCCTAGTGTT-----GTTGTGACTAAGAC 181 * * * *** ** * * ** * * * * * * ** consensus_7949#0 CATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGG 654 consensus_7949#1 CATTCAACCTCACAGAACTTGTTGTCGCAAGCTATCATATCACCAAATGATACTTTTTGG 387 consensus_7949#2 TCTGGGATGTTAAAGAACT-----------GCGATTAGATC--CATAT----TCTGGTGA 224 * * * * ****** ** ** * *** ** ** * ** consensus_7949#0 CATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGG 714 consensus_7949#1 CATATACAGTACAGACGCTCATCCGGGCTGACGCTTGCTTCACTTATACTATGACTAGGG 447 consensus_7949#2 TGCAGATGGGAAAGATG---AACTGGGTCGGTG------------ATACGATTGTGTTGA 269 * * * * *** * * * *** * * **** ** * consensus_7949#0 CTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATACCATCAGCATGTGATCCATAC 774 consensus_7949#1 CTGTTTTCTGATATTACTTTGTGTCGAAATGCATTCATATCATCAGCATGTGATCCATAC 507 consensus_7949#2 CTGTACATTGTTACTAGCTCTT--CGGAGCCTATACATCTTTTGACGACTTGGTTCACCA 327 **** ** ** ** * * ** * ** *** * * * ** * ** consensus_7949#0 TTAAATGGATTTCC-TGGAGGAGACCTT---GTGTTTACTGGAGGATCCATTTTGTGACG 830 consensus_7949#1 TTAAATGGATTTNCCTGGAGGAGACCTCCTCGTGCCGAATNTTGGCCCGA---------- 557 consensus_7949#2 CTTTGAGCGTTTGC-----------CTC---GTGCCGAATCTTGGCCG------------ 361 * * *** * ** *** * * ** consensus_7949#0 TACGGTGTTATTACTTCGACATCCTCGCCTAGTGTTGTTGTGACTAAGACTCTGGGATGT 890 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 TAAAGAACTGCGATTAGATCCATATTCTGGTGATGCAGATGGGAAAGATGAACTGGGTCG 950 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 GTGATACGATTGTGTTAAGTGTACATTGTTACTAGCTCTTCGGAGCCTATACATCTTTTG 1010 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 ACGACTTGGTTCACCACTTTGAGCGTTTGTTAGTTGATTAGTTAGTGTTCTGATGATTTG 1070 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 TGTTTCCTGCGAAGAACAGTTTTGATCGCATACCATATCATATGCGGTATGACCATTGCT 1130 consensus_7949#1 ------------------------------------------------------------ consensus_7949#2 ------------------------------------------------------------ consensus_7949#0 GTCACTAC 1138 consensus_7949#1 -------- consensus_7949#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||