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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[AACTAGCGTTTGCTGCCCAGTATATACAGTGTATCAAACCTAAATGAACGGGAACACCATGAGGATCAAAATCATTCTGATTCCCAAACATTTGTCGTGGAACAGCTGGGGAAGTAGAGCTATTTACATTCGAAGAATAAATTATTCCAATATTTTGAACATCGATATTACTGCTGATGACAGCTTGTTTATGATCATGCACTGGAAAAGATGAATTTAACTTATTAGTTTCCAGATAACTATCATTGTCTAAAAGGTCGTTTGACGGGATGGCGAACGAAGCTTGTGAAACATTCTTCCTTGACTCCTCATCAGTACTGGAGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGGAGTTTTAACATGCTCAGTTTCAGACACCTGCATTTCATTTGCAATAGATGACGTAGATTCACGTGCTTTGTCCTCTCTAAGACTTTCGCTGTGTGATTCGAATGAAGAGTCAGTGGTATCTGTCTCTCCATAAGTTAAAGCAGTGTCACGAAATTTTGCTTCAGATGAGTTGTTATAGTAGGACTCGTCTTCTTCATTATCTTTTTCAATTTTGTCATCTTGATCCACTTCATCAGAATCTATCTCATACGTCGCTTCTTGCTTGCTTACTTGATCAT]
[+] EMBL CD118699 [AACTAGCGTTTGCTGCCCAGTATATACAGTGTATCAAACCTAAATGAACGGGAACACCATGAGGATCAAAATCATTCTGATTCCCAAACATTTGTCGTGGAACAGCTGGGGAAGTAGAGCTATTTACATTCGAAGAATAAATTATTCCAATATTTTGAACATCGATATTACTGCTGATGACAGCTTGTTTATGATCATGCACTGGAAAAGATGAATTTAACTTATTAGTTTCCAGATAACTATCATTGTCTAAAAGGTCGTTTGACGGGATGGCGAACGAAGCTTGTGAAACATTCTTCCTTGACTCCTCATCAGTACTGGAGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATG ]
[+] EMBL CD200739 [ CGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTAGGGGAGACAGTCGCTGATGGTGTCGATACAGGAGTTTTAACATGCTCAGTTTCAGACACCTGCATTTCATTTGCAATAGATGACGTAGATTCACGTGCTTTGTCCTCTCTAAGACTTTCGCTGTGTGATTCGAATGAAGAGTCAGTGGTATCTGTCTCTCCATAAGTTAAAGCAGTGTCACGAAATTTTGCTTCAGATGAGTTGTTATAGTAGGACTCGTCTTCTTCATTATCTTTTTCAATTTTGTCATCTTGATCCACTTCATCAGAATCTATCTCATACGTCGCTTCTTGCTTGCTTACTTGATCAT]
consensusID : consensus_7956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 553 fasta sequence
[AGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTNCACAGCATCGACTCGTTTTGTTCAAATCTACTCGAAGCATCC]
[+] EMBL CD161167 [AGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTNCACAGCATCGACTCGTTTTGTTCAAATCTACTCGAAGCATCC]
[-] EMBL CD065101 [ aTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCAGTTTCAGACGCCTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGA ]
[+] EMBL CD125943 [ gacTATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCG TTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGCTTcc ]
[-] EMBL CD125903 [ TATGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCCTAATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGTTGATTCACAGCAATCGACTCGATTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCC TATCGGCACTGGGGGAGACAGTCGCTGATGGTGTC ATACAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7956#0 AACTAGCGTTTGCTGCCCAGTATATACAGTGTATCAAACCTAAATGAACGGGAACACCAT 60
consensus_7956#1 ------------------------------------------------------------
consensus_7956#0 GAGGATCAAAATCATTCTGATTCCCAAACATTTGTCGTGGAACAGCTGGGGAAGTAGAGC 120
consensus_7956#1 ------AGCAATCGACTCGTTTTGTTCAGATCTACT-CGAAGCATCCTTCTTCGAATCCT 53
**** * ** * ** * * * ** * * *
consensus_7956#0 TATTTACATTCGAAGAATAAATTATTCCAATATTTTGAACATCGATATTACTGCTGATGA 180
consensus_7956#1 TATCGGCACTGGGGGAGACAGTCGCT--GATGGTGTCGATACAGAAGTTTCAAC--ATGC 109
*** ** * * ** * * * ** * * * * ** ** * * ***
consensus_7956#0 CAGCTTGTTTATGATCATGCACTGGAAAAGATGAATTTAACTTATTAGTTTCCAGATAAC 240
consensus_7956#1 TCGGTT--TCAGACGCCTGCATTTCAACA---TGATATGACTGAATAG-------ATGAG 157
* ** * * * **** * ** * ** * *** * *** ** *
consensus_7956#0 TATCATTGTCTAAAAGGTCGTTTGACGGGATGGCGAACGAAGCTTGT-GAAACATTCTTC 299
consensus_7956#1 GGTTGTTGATTCACAG--CAATCGACTCGTTT-TGTTCAGATCTACTCGAAGCATCCTTC 214
* *** * * ** * * *** * * * * * ** * *** *** ****
consensus_7956#0 CTTGACTCCTCATCAGTACTGGAGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCA 359
consensus_7956#1 TTCGAATCCTTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCA 274
* ** **** *** * ***** *************************************
consensus_7956#0 ACATGCTCGGTTTCAGACGCTTGCATTTCAACATGATATGACTGAATAGATGAGGGTTGT 419
consensus_7956#1 ACATGCTCGGTTTCAGACGCCTGCATTTCAACATGATGTGACTGAATAGATGAGGGTTGT 334
******************** **************** **********************
consensus_7956#0 TGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAATCC 479
consensus_7956#1 TGATTCACAGCAATCGACTCGTTTTGTTCAGATCTACTCGAAGCATCCTTCTTCGAACCC 394
********************************************************* **
consensus_7956#0 TTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGGAGTTTTAACATGCTCA 539
consensus_7956#1 TTATCGGCACTGGGGGAGACAGTCGCTGATGGTGTCGATACAGAAGTTTCAACATGCTCG 454
******************************************* ***** *********
consensus_7956#0 GTTTCAGACACCTGCATTTCATTTGCAATAGATGACGTAGATTCACGTGCTTTGTCCTCT 599
consensus_7956#1 GTTTCAGACGCCTGCATTTCA---ACATGATGTGAC-TGAATAGATGAGGGTTGTTGATT 510
********* *********** ** * **** * ** * * * **** *
consensus_7956#0 CTAAGACTTTCGCT-GTGTGATTCGAATGAAGAGTCAGTGGTATCTGTCTCTCCATAAGT 658
consensus_7956#1 NCACAGCATCGACTCGTTTTGTTCAAATCTA---CTCGAAGCATCC-------------- 553
* * * ** ** * *** *** * * * ***
consensus_7956#0 TAAAGCAGTGTCACGAAATTTTGCTTCAGATGAGTTGTTATAGTAGGACTCGTCTTCTTC 718
consensus_7956#1 ------------------------------------------------------------
consensus_7956#0 ATTATCTTTTTCAATTTTGTCATCTTGATCCACTTCATCAGAATCTATCTCATACGTCGC 778
consensus_7956#1 ------------------------------------------------------------
consensus_7956#0 TTCTTGCTTGCTTACTTGATCAT 801
consensus_7956#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||