cluster # 7959

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Schistosoma mansoni
cluster # 7959 cluster # 7959 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7959#0 length = 577 sequences # 3

consensus_7959#1 length = 414 sequences # 3

consensusID : consensus_7959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 577
fasta sequence

                              [GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTCCCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGCCTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATA-AAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCTGGACCTCCTGGGCCTCCAGCTATGAGTTA]

[+] EMBL CD143223             [GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTCCCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGCCTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATANAAGG TGGACTGGCCCTCCA                                                                                                                                                                                                                                                              ]
[-] EMBL CD141094             [                                                                                                                                          TACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATA AAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCT                                                                                            ]
[+] EMBL CD137490             [                                                                                                                                               GGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAGGTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCCATA AAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCTGGACCTCCTGGGCCTCCAGCTATGAGTTA]




>consensus_7959#0
GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTC
CCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGC
CTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAG
GTGATCCTGGTATAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGACTGC
CTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAGGCC
ATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTG
GTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTG
TTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTG
GACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAG
GACCACCTGGACCTCCTGGGCCTCCAGCTATGAGTTA

consensusID : consensus_7959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 414
fasta sequence

                              [TGGTGATCCATCCTTTCCAGGTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCCCCCTGGCGCACCATCTATACCAGGATCACCTACTTCACCTCTAGGTCCACTCGGTCCGTCTGGTCCACAAGGCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA]

[+] EMBL CD072353             [TGGTGATCCATCCTTTCCAGGTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCCCCCTGGCGCACCATCTATACCAGGATCACCTACTTCACCTCTAGGTCCACTCGGTCCGTCTGGTCCACAAGGCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGA                                                                                                  ]
[-] EMBL CD129452             [                                                                                                                                                                GACCCTGGTCTTCCTGGCACAGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA]
[-] EMBL CD129579             [                                                                                                                                                                                                                                                                 GTGCCCCGGGGCCTCAAGGTGGGGCTGGATTCGTCGGAGAACCTGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTGAAGGACCACC                                 ]




>consensus_7959#1
TGGTGATCCATCCTTTCCAGGTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCC
CCCTGGCGCACCATCTATACCAGGATCACCTACTTCACCTCTAGGTCCACTCGGTCCGTC
TGGTCCACAAGGCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCAC
AGCTGGACAACCTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGG
AGAAATCGGACCTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACC
TGGTCCTCCTGGTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACA
TATGGGGAGTGAAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7959#0      GGGAAGTAGGTGGTGCAGGGCCAGTGGGAGAAGCTGGGTCTCCAGGACAACAAGGTCTTC 60
consensus_7959#1      ------------------------------------------------------------
                                                                                  

consensus_7959#0      CCGGAGAACGAGGACTTCAGGGTCCACCAGGTCCTGGGGGAGAGCCAGGCCCACCAGGGC 120
consensus_7959#1      ------------------------------------------------------------
                                                                                  

consensus_7959#0      CTAGTGGTCCTTTAGGGATACCTGGACCAGACGGACCGAGTGGACCTAGAGGTGAAGTAG 180
consensus_7959#1      ----------------------------------------TGGTGATCCATCCTTTCCAG 20
                                                              ***   *  *        **

consensus_7959#0      GTGATCCTGGTA---TAGATGGTGCGCCAGGGGGAAAAGGCGAAGATGGACAACCTGGAC 237
consensus_7959#1      GTCGTCCAGGCAGTCCAGGTTGTCCATCTTCGCCTTTTCCCCCTGGCGCACCATCTA--- 77
                      **  *** ** *    ** * ** *  *   *        *   *  * ** * **    

consensus_7959#0      TGCCTGGACGACCTGGAAAGGATGGATCACCAGGAAGGCAAGGGAAGTCTGGACCACAAG 297
consensus_7959#1      TACCAGGATCACCTAC------TTCACCTCTAGGTCCACTCGGTCCGTCTGGTCCACAAG 131
                      * ** ***  ****        *  * * * ***    *  **   ****** *******

consensus_7959#0      GCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAAC 357
consensus_7959#1      GCCATAAAGGTTGGACTGGCCCTCCAGGTGACCCTGGTCTTCCTGGCACAGCTGGACAAC 191
                      ************************************************************

consensus_7959#0      CTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGAC 417
consensus_7959#1      CTGGTCAACCAGGACTTCGAGGATATCGTGGACTTTCTGGCTTACCGGGAGAAATCGGAC 251
                      ************************************************************

consensus_7959#0      CTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTG 477
consensus_7959#1      CTGTTGGTGCCCCGGGGCCTCAAGGTGAGGCTGGATTCGTCGGAGAACCTGGTCCTCCTG 311
                      ************************************************************

consensus_7959#0      GTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTG 537
consensus_7959#1      GTGGACCTGGACCTATTGGAAGAGATGGACCACGAGGACCTCCTGGACATATGGGGAGTG 371
                      ************************************************************

consensus_7959#0      AAGGACCACC-TGGACC--TCCTGGGCCTCCAGCTATGAGTTA 577
consensus_7959#1      AAGGACCACCCTGGACCCCTCCCTGATTTNCCACCCTTGCCCA 414
                      ********** ******  ***  *   * *  *  *     *