These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7960#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 703 fasta sequence [CTCGGTACCCTGGCATGGTGGAATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGTTCACTTTGGAATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAGATATCGTACTGAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTAGTACTTGGTTAAGTCATCAAGAAGACTCACATCGTATTGTTTT] [+] EMBL CD129300 [CTCGGTACCCTGGCATGGTGGAATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTT ] [+] EMBL CD131770 [ CGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATT ] [-] EMBL CD171040 [ ATCAGAGATTCAGAATTGGCTCAAATCCCGTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGTTCACTTTGGAATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAGATATCGTACTGAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTAGTACTTGGTTAAGTCATCAAGAAGACTCACATCGTATTGTTTT] consensusID : consensus_7960#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 697 fasta sequence [AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTTATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTACTCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATGGTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACCTATTGACATNCN] [+] EMBL CD188608 [AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTTATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTACTCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATGGTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGCGGCGTGGTGATCTCGTTGGTTCTCTTGAAGTCATTAGTCAGCAACCATGAATATCTACAGTTATGGCGATCAGAGATCCAGAATTGGCTCANATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAAGTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAA ATCACAACTAGTTCTAGTACGGCCAGCCCATTGGGTATGCCACTT ] [+] EMBL CD127914 [ tagtaggtACCGTTATTTCATTATCTTGATTTTGCTATGGAATGGTTCTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTATGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAA ] [-] EMBL CD127997 [ GTATAGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACCACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTTACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATCGGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCCACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGGTGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCTACGTACAATTGCTGTATTACCTACCTATTGACATNCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7960#0 ------------------------------------------------------------ consensus_7960#1 AACCGGAGAACCAAATATTTATGGCATACAAGCTACTACAAAAGCTATTGAAGCTGTTTT 60 consensus_7960#0 ------------------------------------------------------------ consensus_7960#1 ATCCCGTGAGACATTTTACTCTGTAGATCGTCAGTATCCTAAGGCTTTGTTCAGTGTTAC 120 consensus_7960#0 ----------------------------------------CTCGGT---ACCCTGGCATG 17 consensus_7960#1 TCATATTATTTCTTCTCATTTATCACCGTTATTTCATCAACTTGATTTTGCTATGGAATG 180 ** * * * *** *** consensus_7960#0 GTGG-------AATCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTA 70 consensus_7960#1 GTTGTCTGTTAAGTCAGGAAAGGCTTTATATAAGAAAGGAGACGTCTCAAATCACGTTTA 240 ** * * *********************************************** consensus_7960#0 TGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTAT 130 consensus_7960#1 TGTAGTTTTAAGTGGTCGATTAAGACAAGTCGATAATATGCCTGATGGAGGTCATCGTAT 300 ************************************************************ consensus_7960#0 AGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACC 190 consensus_7960#1 AGTCAGTGAATTGGGGCGTGGTGATCTCGTTGGTTTTCTTGAAGTCATTAGTCAGCAACC 360 ************************************************************ consensus_7960#0 ACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTT 250 consensus_7960#1 ACGAATATCTACAGTTATGGCGATCAGAGATTCAGAATTGGCTCAAATCCCCTCACATTT 420 ************************************************************ consensus_7960#0 ACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATC 310 consensus_7960#1 ACTCCATCATCTTAAGAATAAATTTCCACAAGTTTTAACTCGTATTATTCAATTATTATC 480 ************************************************************ consensus_7960#0 GGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCC 370 consensus_7960#1 GGATAAATTATTGGGGAATTTAACAACTAGTTCTAGTACGGCCAGCCAATTGGGTATGCC 540 ************************************************************ consensus_7960#0 ACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGG 430 consensus_7960#1 ACTTCTACATATGACCAGTACAAATTCTTTAGTTACCGGTGGATTAGGTTATACAACTGG 600 ************************************************************ consensus_7960#0 TGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCT 490 consensus_7960#1 TGGGAATTCTAAATTGGATGTTTTATATAGTCCATTGAATAGTGGTGTTATGACTAATCT 660 ************************************************************ consensus_7960#0 ACGTACAATTGCTGTATTACCTACTACAACGGATATTAATGCTGAAGCGTTCACTTTGGA 550 consensus_7960#1 ACGTACAATTGCTGTATTACCTAC--CTATTGACATNCN--------------------- 697 ************************ * * ** ** consensus_7960#0 ATTACAACATTCTATGAGTTCGATGGGATCATCTGTTCGTCTTACTTCAGATATCGTACT 610 consensus_7960#1 ------------------------------------------------------------ consensus_7960#0 GAAACGTTTAGGTTCATGCGCATTCGATAGTGTTAATCAGTATAGACTTAGTACTTGGTT 670 consensus_7960#1 ------------------------------------------------------------ consensus_7960#0 AAGTCATCAAGAAGACTCACATCGTATTGTTTT 703 consensus_7960#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||