These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGGCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTGGAAAGAATAGAAGTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAATGAATTGGCAGTGTTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCAGGAGTAGCAGTACCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGATCACTAGCGGAACTTGCTGTTGTTGCCAAAGCTAGAGCACGTTTCTGCCATTGAGCTATTAGCTGCTTTTGTTGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAATATTGAATCCGGATAGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATTGACTGGCTGAATTGTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACTGATTGNTATGCAGCTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGATAGCTGATTGACTTCTGGTTTAACGTTACCAGAGAGTGA] [+] EMBL CD190946 [CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGGCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTGGAAAGAATAGAAGTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAATGAATTGGCAGTGTTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCAGGAGTAGCAGTACCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGATCACTAGCGGAACTTGCTGTTGTTGCCAAAGCTAGAGCACGTTTCTGCCATTGAGCTATTAGCTGCTTTTGTTGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAATATTGAATCCGGATAGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATTGACTGGCTGAATTGTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACTGATTGNTATGCAGCTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGATAGCTGATTGACTTCTGGTTTAACGTTACCAGAGAGTGA] consensusID : consensus_7965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [GGACTAACACAGGCCACCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAAAACTGAAACTGAAACTGCCAGTCAATGTTCCGTGTAAAATTAGACGGTGAGTATTATGTCATAAAATCACACAAGATGCTTCACAATCATCCTTATAGTAGTTCATGGATGGTTTGTTATCCACGAACCAGAAGATTGCCCTCAAAAGAAAAAAAAGCTAAAGCCTTTGATACCACAATCAGCATCAGCAGATGAATTAATAGAAAGTATTAAAGATCGATCTGGTATGCAGGTTACTGCTGCTGATGTGAAGACTATGAAAGCTCAACTCTCCACAGTATCTGATATATTGCGGGAAAACGGTGAACTAAGAGAGTATTCAGAAAATGGAAATGTCACCAGAATCTGCCTTAGTACTTATGAGCGGATAGAATTATATAACAAATATTCAGAAGTAGTTTGTATTGGTTGTGCTTACAACACCAAAATTAAAAAATATTCGTTATTCTAGTTGGTAATAACAGATAGTT] [+] EMBL CD097334 [GGACTAACACAGGCCACCAAGCCTCCTGTCCTTTCCAAACTGAAACTGAAAACTGAAACTGAAACTGCCAGTCAATGTTCCGTGTAAAATTAGACGGTGAGTATTATGTCATAAAATCACACAAGATGCTTCACAATCATCCTTATAGTAGTTCATGGATGGTTTGTTATCCACGAACCAGAAGATTGCCCTCAAAAGAAAAAAAAGCTAAAGCCTTTGATACCACAATCAGCATCAGCAGATGAATTAATAGAAAGTATTAAAGATCGATCTGGTATGCAGGTTACTGCTGCTGATGTGAAGACTATGAAAGCTCAACTCTCCACAGTATCTGATATATTGCGGGAAAACGGTGAACTAAGAGAGTATTCAGAAAATGGAAATGTCACCAGAATCTGCCTTAGTACTTATGAGCGGATAGAATTATATAACAAATATTCAGAAGTAGTTTGTATTGGTTGTGCTTACAACACCAAAATTAAAAAATATTCGTTATTCTAGTTGGTAATAACAGATAGTT] consensusID : consensus_7965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence [CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG-ACAAT--GA-GGCCGACTGGGCTTCCGTCTCACCTTCAAATACGCCTTCCCCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT] [-] EMBL CD065451 [CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCG ACAAT GA GGCCGACTGG ] [+] EMBL CD067734 [ CTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCCCCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGT] consensusID : consensus_7965#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCA] [+] EMBL CD126397 [ACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCA] consensusID : consensus_7965#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [GGCCCAATGTCTCACCGAACACTGCGACTGCCGAGCGTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCAACTTCACGACCATTCAAATACGCCTTC] [+] EMBL CD166538 [GGCCCAATGTCTCACCGAACACTGCGACTGCCGAGCGTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCCAACTTCACGACCATTCAAATACGCCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7965#2 CTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCC 60 consensus_7965#3 -----------------------------------------------ACCAATCGTTCCC 13 consensus_7965#4 ------------------------------------------------------------ consensus_7965#0 ------------CACCATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCC 48 consensus_7965#1 ----------------------------GGACTAACACAGGCCACCAAGCCTCCTGTCCT 32 consensus_7965#2 GTTCCGGTTGTG-CTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACAGGAGCG--A 117 consensus_7965#3 GTTCCGGTTGTG-CTGCAGTCTCTGCAAGCGCCTCTGACTCCAATTCGACTGGAGCG--A 70 consensus_7965#4 ------------------------------------------------------------ consensus_7965#0 GTTCCGGTTGTGGCCATAGAAGCTATTTGATTTTGGGTCGATGGATTAACTGCACCACTG 108 consensus_7965#1 TTCCAAACTGAAACTGAAAACTGAAACTGAAACTGCCAGTCAATGTTCCGTGTAAAATTA 92 consensus_7965#2 ACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTC-TGCGTCCGCTT-C 175 consensus_7965#3 ACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTCTC-TGCGTCCGCTT-C 128 consensus_7965#4 ------------------------------------------------------------ consensus_7965#0 GAAAGAATAGAAGTATTGAGACCAGATCTTAAGAGGCCTAACTGTAATGCAGCTGGTAAT 168 consensus_7965#1 GACGGTGAGTATTATGTCATAAAATCACACAAGATGCTTCACAATCATCCTTATAGTAGT 152 consensus_7965#2 AACTTGCC----CCAATGTCTCA--CCGA-C-AATGAG---GCCGAC--TGGGCTTCC-- 220 consensus_7965#3 AACTTGCC----CCAATGTCTCA--CCGAAC-ACTTCGACTGCCGAC--TCGGCTTCC-- 177 consensus_7965#4 -----GGC----CCAATGTCTCA--CCGAAC-ACTGCGACTGCCGAGCGTCGGCTTCC-- 46 consensus_7965#0 GAATTGGCAGTGTTAATGATAGAAGCTAAGCTAGTAGGAGTAGCGACAGTCAAATTAGCA 228 consensus_7965#1 TCATGGATGGTTTGTTATCCACGAACCAGAAGATTGCCCTCAAAAGAAAAAAAAGCTAAA 212 * * * * consensus_7965#2 ---GTCTCACCTTCAAATACGCCTTCCCCAACTTCACCATATTCCGCCTCCATCTCACCG 277 consensus_7965#3 ---GTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCG 234 consensus_7965#4 ---GTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCG 103 consensus_7965#0 GGAGTAGCAGTACCTGGAGTGATGACAGGAAGTCGTCTTTCTTGAACGCTCTTTAAGTGA 288 consensus_7965#1 G--CCTTTGATACCACAATCAGCATCAGCAGATGAATTAATAGAAAGTATTAAAGATCGA 270 * * * * consensus_7965#2 ACAC--GCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCCA 335 consensus_7965#3 ACAC--GCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAG 292 consensus_7965#4 ACAC--GCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCC-CAA 160 consensus_7965#0 TCACTAGCGGAACTTGCTGTTGTTGCCAAAGCTAGAGCAC-GTTTCTGCCATTGAGCTAT 347 consensus_7965#1 TCTGGTATGCAGGTTACTGCTGCTGATGTGAAGACTATGAAAGCTCAAC--TCTCCACAG 328 * * * * * ** * consensus_7965#2 TCTC-------ACCGACACG------CTCAACCAATCGTTCCCGTTCCGGTTGT------ 376 consensus_7965#3 ACTCCAATTCGACTGGAGCGA----ACACAGACACACGTTCCGATTCAACCTGTTCTACC 348 consensus_7965#4 CTTC-------ACGACCAT--------TCAAATACGCCTTC------------------- 186 consensus_7965#0 TAGCTGCTTTTGTTGGTGTTGTGCAGCTAACAGAGAAGCTGTTACTAAATTTGGAGCAAT 407 consensus_7965#1 TATCTGATAT-ATTGCGGGAAAACGGTGAACTAAGAGAGTATTCAGAAAATGGAAATGTC 387 * * * * consensus_7965#2 ------------------------------------------------------------ consensus_7965#3 ACTTCA------------------------------------------------------ 354 consensus_7965#4 ------------------------------------------------------------ consensus_7965#0 ATTGAATCCGGATAGCTGAGATTGTTGAGCAATCAACTGGTTCAGTAACTGTTGTTGATT 467 consensus_7965#1 ACCAGAATCTGCCTTAGTACTTATGAGCGGATAGAATTATATAACAAATATTCAGAAGTA 447 consensus_7965#2 ------------------------------------------------------------ consensus_7965#3 ------------------------------------------------------------ consensus_7965#4 ------------------------------------------------------------ consensus_7965#0 GACTGGCTGAATTGTACTTGCTGAGGAATGAATATTATTATTGTTATTAGCTTGAACACT 527 consensus_7965#1 GTTTGTATTGGTTGTGCTTAC--AACACCAAAATTAAAAAATATTCGTTATTCTAGTTGG 505 consensus_7965#2 ------------------------------------------------------------ consensus_7965#3 ------------------------------------------------------------ consensus_7965#4 ------------------------------------------------------------ consensus_7965#0 GATTGNTATGCAGCTGCCGCAATTAGTTGTTGTAATTGTGCTTGTTGAATGGATGCAGAT 587 consensus_7965#1 TAATAACAGATAGTT--------------------------------------------- 520 consensus_7965#2 -------------------------------------- consensus_7965#3 -------------------------------------- consensus_7965#4 -------------------------------------- consensus_7965#0 AGCTGATTGACTTCTGGTTTAACGTTACCAGAGAGTGA 625 consensus_7965#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||