These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 673 fasta sequence [ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACTTTCAAGTCACAGT] [+] EMBL CD071559 [ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTA ] [-] EMBL CD198217 [ TCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATCCTACTACATTACCTTCAGTTGAAGAATTAGAA ] [+] EMBL CD066128 [ GAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGTGATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCT ] [+] EMBL CD065248 [ AAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGTGATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGATGACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAAGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACATTCACTTTCAAGTCACAGT] [-] EMBL CD189708 [ AGTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAGGGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCTGTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGAAGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTTACTTTTTCCACACTTAGAGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTATTTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGACGCTACG ] consensusID : consensus_7971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 152 fasta sequence [ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGAATGCTAATCAAGCTGGCGCATTTTTCGCTCCT] [+] EMBL CD198016 [ATTGTTACACTATCCGTGCTTCACTTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCTATTTCACTGCCATAGCATGTTCCCCGGACGGCCTGAATGCTAATCAAGCTGGCGCATTTTTCGCTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7971#0 ATCACATTGTTCATGGAAGTACCATGCACACATTCTGTACTCATTTCATTTTGATGCTGT 60 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 GATGGAATGGTAGATATTAACGCAAAGCTTGGTGAGACTGAAGAAACAGTTTGGTTCTGT 120 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 GATACTACTACATTACCTTCAGTTGAAGAATTAGAAATACAGCTCGGCAGTGGTGTGGAT 180 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 GACACTGTCAAAAAGTGACCATGAGGTTGTGTAGCAAATGTTCCGCTGGCAAGATTAAAA 240 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 GTGTTTGCAATCTCAGTGTTAACTTGACTCAAAATAGGAACTGCAGAGAGTGACATAGAG 300 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 GGCAATGCTGCAAAGACTAATTGCGAGTGGGGTGATATGACACTGGAACCACCTAGACCT 360 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 GTAGCACTAGGGAAAGCATGTAAAGTAAGCTGCCCGGGATGAGAATCACAAGTAGCGAGA 420 consensus_7971#1 ------------------------------------------------------------ consensus_7971#0 AGTAATCTTTGTTCTGGGACAGGTTGATTAACACTGATTCCATCGTTAAGTACACTT-AC 479 consensus_7971#1 ------------------------------------ATTGTTACACTATCCGTGCTTCAC 24 *** * ** *** ** consensus_7971#0 TTTTTCCACACTTAG---AGGATTAGACTGAAAAGTAGAGCTATCTGCCAGATCTTCTAT 536 consensus_7971#1 TTTTTCCCCAACCAGTTCAAACATATCCTTCCGGATTTCACCATTCCCAAGCTTCTCCCT 84 ******* ** ** * ** ** * * ** * ** * ** * consensus_7971#0 -TTTCAGTTTACGAGGATGTTTAGCTGTGTCGTAACACTTTGTCGCTTGTGGGAC-GCTA 594 consensus_7971#1 ATTTCACTGCCATAGCATGTTCC------CCGGACGGCCTGAATGCTAATCAAGCTGGCG 138 ***** * ** ***** ** * * * *** * * * consensus_7971#0 CGTTTCTCACCACAGTTTGTCTTAGCATCAGATGTTGAAGTTATTGGACTCCTAGTTACA 654 consensus_7971#1 CATTTTTCGCTCCT---------------------------------------------- 152 * *** ** * * consensus_7971#0 TTCACTTTCAAGTCACAGT 673 consensus_7971#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||