cluster # 7990

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Schistosoma mansoni
cluster # 7990 cluster # 7990 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7990#0 length = 729 sequences # 3

consensus_7990#1 length = 656 sequences # 1
consensus_7990#2 length = 264 sequences # 2

consensusID : consensus_7990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 729
fasta sequence

                              [TCCTCAGGCAGTGATACACCGGTTAAAGGCCCAAACAAGTCCTCTAATTCTTCACATGAACAACGTCGAGAATGGTTAAGAAACATTCCTAACGCTTGCGGTGTTTATGTATGTCCTGACTCACCTCCTATCATTCATAGGACGCCTGGTGCTCCAGGATCTGGTAGTAACATTAATGATATTAGTAACGGTTTCGGACCGTCAAATGATTTGCAACTGTTAGATAATGCATTGGGGAAAGCTTCCATTCGCGAACCGAATGACTTAAGTCCAGCTCGTAAGTATGGCGTCAATAACCACCGTCATTCCAAACGCCGCAGTTATTCAATGTCAGAAACAGCTGGTGCGACAAGTGATATATCTGGTGCTGAAAGTGATTCGTTCCATCGTTATACGAATTCAGGATCAAGAGGTCAGTTCAACTGTGGAGGCAGTGGCATTGCTAATCGACATGCTCAAAATCGCGGTCACCCACGTGATAATAATAATAATAGTCACAACCATCGGAGTGGAGGGAACACTGGACTAAATGGAGGTGGTAGTAGTGGTCAGAGAAACTTAGCAGATTGGGATCGAATCTGTGTTGAAGAATTCATTGATGAAGATTTTGATTTCGAAGGAAACTTAGCCTTATTTAATAAGAGTGCATTCTATGAAATGGTTGATTCGCGCGAAGGTCATTCAATAACAAATACTTCTGACGTGAATAATTCTTTCGTTTCTTCTCTA]

[+] EMBL CD094184             [TCCTCAGGCAGTGATACACCGGTTAAAGGCCCAAACAAGTCCTCTAATTCTTCACATGAACAACGTCGAGAATGGTTAAGAAACATTCCTAACGCTTGCGGTGTTTATGTATGTCCTGACTCACCTCCTATCATTCATAGGACGCCTGGTGCTCCAGGATCTGGTAGTAACATTAATGATATTAGTAACGGTTTCGGACCGTCAAATGATTTGCAACTGTTAGATAATGCATTGGGGAAAGCTTCCATTCGCGAACCGAATGACTTAAGTCCAGCTCGTAAGTATGGCGTCAATAACCACCGTCATTCCAAACGCCGCAGTTATTCAATGTCAGAAACAGCTGGTGCGACAAGTGATATATCTGGTGCTGAAAGTGATTCGTTCCATCGTTATACGAATTCAGGATCAAGAGGTCAGTTCAACTGTGGAGGCAGTGGCATTGCTAATC                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD062514             [                                                                                                                                                            aagTCTGGTACTAACA TGATGATATTAGTAACGGTTTCGGACCGTCAAATGATTTGCAACTGTTAGATAATGCA TGGGGAAAGCTTCCATTCGCGAACCGAATGACTTAAGTCCAGCTCGTAAGTATGGCGTCAATAACCACCGTCATTCCAAACGCCGCAGTTATTCAATGTCAGAAACAGCTGGTGCGACAAGTGATATATCTGGTGCTGAAAGTGATTCGTTCCATCGTTATACGAATTCAGGATCAAGAGGTCAGTTCAACTGTGGAGGCAGTGGCATTGCTAATCGACATGCTCAAAATCGCGGTCACCCACGTGATAATAATAATAATAGTCACAACCATCGGAGTGGAGGGAACACTGGACTAAATGGAGGTGGTAGTAGTGGTCAGAGAAACTTAGCAGATTGGGATCGAATCTGTGTTGAAGAATTCATTGATGAAGATTTTGATTTCGAAGGAAACTTAGCCTTATTTAATAAGAGTGCATTCTATGAAA                                                                       ]
[+] EMBL CD065017             [                                                                                                                                                                                                                                                                                                                     AAGCGCCGCAGTTATTCAATGTCAGAAACAGCTGGCGCGACAAGTGATATATCTGGTGCTGAAAGTGATTCGTTCCATCGTTATACGAATTCAGGATCAAGAGGTCAGTTCAACTGTGGAGGCAGTGGCATTGCTAATCGACATGCTCAAAATCGCGGTCACCCACGTGATAATAATAATAATAGTCACAACCATCGGAGTGGAGGGAACACTGGACTAAATGGAGGTGGTAGTAGTGGTCAGAGAAACTTAGCAGATTGGGATCGAATCTGTGTTGAAGAATTCATTGATGAGGATTTTGATTTCGAAGGAAACTTAGCCTTATTTAATAAGAGTGCATTCTATGAAATGGTTGATTCGCGCGAAGGTCATTCAATAACAAATACTTCTGACGTGAATAATTCTTTCGTTTCTTCTCTA]




>consensus_7990#0
TCCTCAGGCAGTGATACACCGGTTAAAGGCCCAAACAAGTCCTCTAATTCTTCACATGAA
CAACGTCGAGAATGGTTAAGAAACATTCCTAACGCTTGCGGTGTTTATGTATGTCCTGAC
TCACCTCCTATCATTCATAGGACGCCTGGTGCTCCAGGATCTGGTAGTAACATTAATGAT
ATTAGTAACGGTTTCGGACCGTCAAATGATTTGCAACTGTTAGATAATGCATTGGGGAAA
GCTTCCATTCGCGAACCGAATGACTTAAGTCCAGCTCGTAAGTATGGCGTCAATAACCAC
CGTCATTCCAAACGCCGCAGTTATTCAATGTCAGAAACAGCTGGTGCGACAAGTGATATA
TCTGGTGCTGAAAGTGATTCGTTCCATCGTTATACGAATTCAGGATCAAGAGGTCAGTTC
AACTGTGGAGGCAGTGGCATTGCTAATCGACATGCTCAAAATCGCGGTCACCCACGTGAT
AATAATAATAATAGTCACAACCATCGGAGTGGAGGGAACACTGGACTAAATGGAGGTGGT
AGTAGTGGTCAGAGAAACTTAGCAGATTGGGATCGAATCTGTGTTGAAGAATTCATTGAT
GAAGATTTTGATTTCGAAGGAAACTTAGCCTTATTTAATAAGAGTGCATTCTATGAAATG
GTTGATTCGCGCGAAGGTCATTCAATAACAAATACTTCTGACGTGAATAATTCTTTCGTT
TCTTCTCTA

consensusID : consensus_7990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence

                              [TGNGAAGAAGTACTAGGTACGACCTGGACTCCGAACCACTCTTATTAAATCTCATATTAACCCACTATTAAAATAACGTCACAAACGTCCGTTATGTGCCATTCCTACGTAAAAGTGAACATGCAGTTTCAGTCTTTGATTTCCATATAGTTGTCGACAATGAGGGTGTGTTAGCCTAAGCCAAACTAAACGTCTGAAAAGCATATACACTTAAGGTTCTCAGTAGGCTGGACAATATAACCAAGGTCCACCATTAAAACGGCTTGAGACGTATTCGGAAATTTGTACATAAAAGTCACTGTACCACACATTATCTGTGTTAGCGGAATATAAATTGGATAAAACCACGTTTCGTACGGGAGTGTTGTGGCACGCTGATTCAGTCAGTCAGTCAGCTACAACTTGGGACCAGGCACATATTTACATCGGTCCAAGTTGCCATACCTCCTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAATATATAAAAGACAGGTTGTATATAAGGATATAGCATANGAAGGAAGAAAGTTATGAAACAGTTTTAATCTCAAGGTTTAAGGAAAGATAAAGAGTGTATACACCTGTGCCATTGTGATCGATTCTGAGTCATGTCACCCAGAGTCTACAACC]

[+] EMBL CD132839             [TGNGAAGAAGTACTAGGTACGACCTGGACTCCGAACCACTCTTATTAAATCTCATATTAACCCACTATTAAAATAACGTCACAAACGTCCGTTATGTGCCATTCCTACGTAAAAGTGAACATGCAGTTTCAGTCTTTGATTTCCATATAGTTGTCGACAATGAGGGTGTGTTAGCCTAAGCCAAACTAAACGTCTGAAAAGCATATACACTTAAGGTTCTCAGTAGGCTGGACAATATAACCAAGGTCCACCATTAAAACGGCTTGAGACGTATTCGGAAATTTGTACATAAAAGTCACTGTACCACACATTATCTGTGTTAGCGGAATATAAATTGGATAAAACCACGTTTCGTACGGGAGTGTTGTGGCACGCTGATTCAGTCAGTCAGTCAGCTACAACTTGGGACCAGGCACATATTTACATCGGTCCAAGTTGCCATACCTCCTTAGCACAACAAGATGAACACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAATATATAAAAGACAGGTTGTATATAAGGATATAGCATANGAAGGAAGAAAGTTATGAAACAGTTTTAATCTCAAGGTTTAAGGAAAGATAAAGAGTGTATACACCTGTGCCATTGTGATCGATTCTGAGTCATGTCACCCAGAGTCTACAACC]




>consensus_7990#1
TGNGAAGAAGTACTAGGTACGACCTGGACTCCGAACCACTCTTATTAAATCTCATATTAA
CCCACTATTAAAATAACGTCACAAACGTCCGTTATGTGCCATTCCTACGTAAAAGTGAAC
ATGCAGTTTCAGTCTTTGATTTCCATATAGTTGTCGACAATGAGGGTGTGTTAGCCTAAG
CCAAACTAAACGTCTGAAAAGCATATACACTTAAGGTTCTCAGTAGGCTGGACAATATAA
CCAAGGTCCACCATTAAAACGGCTTGAGACGTATTCGGAAATTTGTACATAAAAGTCACT
GTACCACACATTATCTGTGTTAGCGGAATATAAATTGGATAAAACCACGTTTCGTACGGG
AGTGTTGTGGCACGCTGATTCAGTCAGTCAGTCAGCTACAACTTGGGACCAGGCACATAT
TTACATCGGTCCAAGTTGCCATACCTCCTTAGCACAACAAGATGAACACCGGATTCATAG
AAATAGTTAATTTAGTGGTGGTAATATATAAAAGACAGGTTGTATATAAGGATATAGCAT
ANGAAGGAAGAAAGTTATGAAACAGTTTTAATCTCAAGGTTTAAGGAAAGATAAAGAGTG
TATACACCTGTGCCATTGTGATCGATTCTGAGTCATGTCACCCAGAGTCTACAACC

consensusID : consensus_7990#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 264
fasta sequence

                              [ATATAGATGTGTGTTAATGAAGGTAAGATACTTGTGCCCATGGGATTAAGCAATTCCTCAAATTAAAATTCCCAATAGTCACCAAAGAAAACTGTTGTCAGGACCCCATTCATAAATGAACAAACAATAACCACTTTTCATTTATTTATTTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGACAGATATGCGCCGCACAAATCTTATTTGATTTGTGTGAGGGCTGAGATACTGCCCAGGTGCCCAAACTGAAGCAG]

[+] EMBL CD158304             [ATATAGATGTGTGTTAATGAAGGTAAGATACTTGTGCCCATGGGATTAAGCAATTCCTCAAATTAAAATTCCCAATAGTCACCAAAGAAAACTGTTGTCAGGACCCCATTCATAAATGAACAAACAATAACCACTTTTCATTTATTTATTTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGACAGATATGCGCCGCACAAATCTTATTTGATTTGTGTGAGGGCTGAGATACTGCCCAGGTGCCCAAACTGAAGCAG]
[+] EMBL CD158216             [ATATAGATGTGTGTTAATGAAGGTAAGATACTTGTGCCTATGGGATTAAGCAATTCCTCAGATTAAAATTCCCAATAGTCACCAAAGAAAACTGTTGTCAGGACCCCATTCATAAATGAACAAACAATAACCACTTTTCATTTATTTATTTATTTAAACACATAAATATTGGTACAAGGAAGCACCAGACAGATATGCGCCGCACAAATCTTATTTGATTTGTGTGAGGGCTGAGATACTGCCCAGGAGCCCAAACTGAAGCA ]




>consensus_7990#2
ATATAGATGTGTGTTAATGAAGGTAAGATACTTGTGCCCATGGGATTAAGCAATTCCTCA
AATTAAAATTCCCAATAGTCACCAAAGAAAACTGTTGTCAGGACCCCATTCATAAATGAA
CAAACAATAACCACTTTTCATTTATTTATTTATTTAAACACATAAATATTGGTACAAGGA
AGCACCAGACAGATATGCGCCGCACAAATCTTATTTGATTTGTGTGAGGGCTGAGATACT
GCCCAGGTGCCCAAACTGAAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7990#1      ------------------------------------------------------------
consensus_7990#2      ------------------------------------------------------------
consensus_7990#0      TCCTCAGGCAGTGATACACCGGTTAAAGGCCCAAACAAGTCCTCTAATTCTTCACATGAA 60
                                                                                  

consensus_7990#1      ------TGNGAAGAAGTACTAGGTACGACCTGGACTCCGAACCACTCTTATTAAATCTCA 54
consensus_7990#2      ------------------------------------------------------------
consensus_7990#0      CAACGTCGAGAATGGTTAAGAAACATTCCTAACGCTTGCGGTGTTTATGTATGTCCTGAC 120
                                                                                  

consensus_7990#1      TATTAACCCACTATTAAAATAACGTCACAAACGTCCGTTATGTGCCATTCCTACGTAAAA 114
consensus_7990#2      ------------------------------------------------------------
consensus_7990#0      TCACCTCCTATCATTCATAGGACGCCTGGTGCTCCAGGATCTGGTAGTAACATTAATGAT 180
                                                                                  

consensus_7990#1      GTGAACATGCAGTTTCAGTCTTTGATTTCCATATAGTTGT-CGACAATGAGGGTGTGTTA 173
consensus_7990#2      ------------------------------ATATAGATGTGTGTTAATGAAGGTAAGATA 30
consensus_7990#0      ATTAGTAACGGTTTCGGACCGTCAAATGATTTGCAACTGTTAGATAATGCATTGGGGAAA 240
                                                     *  *  ***  *  ****       *  *

consensus_7990#1      GCCTAAGCCAAACTAAACGTCTGAAAAGCATATACACTTAAGGTTCTCAGTAGGCTGGAC 233
consensus_7990#2      -CTTGTGCC----CATGGGATTAAGCAATTCCTCAAATTAAAATTCCCAATAGTC----- 80
consensus_7990#0      GCTTCCATTCGCGAACCGAATGACTTAAGTCCAGCTCGTAAGTATGGCGTCAATAACCAC 300
                       * *          *           *           ***   *  *   *        

consensus_7990#1      AATATAACCAAGGTCCACCATTAAAACGGCTTGAGACGTATTCGGAAATTTGTACATAAA 293
consensus_7990#2      ------ACCAAAGAAAACTGTT------GTCAGGACCCCATTCATAAATGAACAAACAAT 128
consensus_7990#0      CGTCATTCCAAACGCCGCAGTTATTCAATGTCAGAAACAGCTGGTGCG---ACAAGTGAT 357
                             ****      *  **                   *           *    * 

consensus_7990#1      AGTCACTGTACCACACATTATCTGTGTTAGCGGAATATAAATT--GG-ATAAAACCACGT 350
consensus_7990#2      AACCACTTTTCATTTATTTATTTAT-TTAAACACATAAATATT--GGTACAAGGAAGCAC 185
consensus_7990#0      ATATCTGGTGCTGAAAGTGATTCGTTCCATCGTTATACGAATTCAGGATCAAGAGGTCAG 417
                      *       * *      * **   *   *     ***   ***  **   **     *  

consensus_7990#1      TTCGTACGGGAGTGTTGTGGCACGCTGATTCAGTCAGTCAGTCAGCTACAACTTGGGACC 410
consensus_7990#2      CAGACAGATATGCGCCGCACAAATCTTATTTGATTTGTGTGAGGGCTGAGAT-----ACT 240
consensus_7990#0      TTCAACTGTGGAGGCAGTGGCATTGCTAATCGACATGC-TCAAAATCGCGGT-------C 469
                                   *  *    *     * *      *                       

consensus_7990#1      AGGCACATATTTACATCGGTCCAAGTTGCCATACCTCCTTAGCACAACAAGATGAACACC 470
consensus_7990#2      GCCCAGGTGCCCAAACTGAAGCAG------------------------------------ 264
consensus_7990#0      ACCCACGTGATAATAATAATAATAGTCACAACCATCGGAGTGGAGGGAACACTGGACTAA 529
                         **  *    * *                                             

consensus_7990#1      GGATTCATAGAAATAGTTAATTTAGTGGTGGTAATATATAAAAGACAGGTTGTATATAAG 530
consensus_7990#2      ------------------------------------------------------------
consensus_7990#0      ATGGAGGTGGTAGTAGTGGTCAGAGAAACTTAGCAGATTGGGATCGAATCTGTGTTGAAG 589
                                                                                  

consensus_7990#1      GATATAGCATANGAAGGAAGAAAGTTATGAAACAGTTTTAATCTCAAGGTTTAAGGAAAG 590
consensus_7990#2      ------------------------------------------------------------
consensus_7990#0      AATTCATTGATGAAGATTTTGATTTCGAAGGAAACTTAGCCTTATTTAATAAGAGTGCAT 649
                                                                                  

consensus_7990#1      ATAAAGAGTGTATACACCTGTGCCATTGTGATCGATTCTGAGTCATGTCACCCAGAGTCT 650
consensus_7990#2      ------------------------------------------------------------
consensus_7990#0      TCTATGAAATGGTTGATTCGCGCGAAGGTCATTCAATAACAAATACTTCTGACGTGAATA 709
                                                                                  

consensus_7990#1      ACAACC-------------- 656
consensus_7990#2      --------------------
consensus_7990#0      ATTCTTTCGTTTCTTCTCTA 729